RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SPRED2Q7Z698 418 aa18.25■□□□□ 0.51
MCF2L-228ENST00000487354 RPUSD2Q8IZ73 545 aaKnown RBP18.25■□□□□ 0.51
MCF2L-228ENST00000487354 CHURC1Q8WUH1 139 aa18.25■□□□□ 0.51
MCF2L-228ENST00000487354 ZNF287Q9HBT7 754 aa18.25■□□□□ 0.51
MCF2L-228ENST00000487354 TNKSO95271 1327 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 ZBBXA8MT70 800 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 ZEB2O60315 1214 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 NOVP48745 357 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 PPARAQ07869 468 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 C20orf194Q5TEA3 1177 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 PPP1R13LQ8WUF5 828 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 INCENPQ9NQS7 918 aa18.24■□□□□ 0.51
MCF2L-228ENST00000487354 RBM47A0AV96 593 aaKnown RBP18.23■□□□□ 0.51
MCF2L-228ENST00000487354 APPP05067 770 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 ZFYP08048 801 aaPredicted RBP18.23■□□□□ 0.51
MCF2L-228ENST00000487354 PFKMP08237 780 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 RCSD1Q6JBY9 416 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 KIAA1211Q6ZU35 1233 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 DEFB128Q7Z7B8 93 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 IL27Q8NEV9 243 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 RANBP17Q9H2T7 1088 aaKnown RBP18.23■□□□□ 0.51
MCF2L-228ENST00000487354 CERS4Q9HA82 394 aa18.23■□□□□ 0.51
MCF2L-228ENST00000487354 SIP14410 1827 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 NFIBO00712 420 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 ICAM1P05362 532 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 HOXD11P31277 338 aaPredicted RBP18.22■□□□□ 0.51
MCF2L-228ENST00000487354 ALDH5A1P51649 535 aaPredicted RBP18.22■□□□□ 0.51
MCF2L-228ENST00000487354 TAP1Q03518 808 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 PDE4BQ07343 736 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 TMEM67Q5HYA8 995 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 NSMFQ6X4W1 530 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 KHSRPQ92945 711 aaKnown RBP eCLIP18.22■□□□□ 0.51
MCF2L-228ENST00000487354 FAM122AQ96E09 287 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 TSPYL2Q9H2G4 693 aaPredicted RBP18.22■□□□□ 0.51
MCF2L-228ENST00000487354 EPHX3Q9H6B9 360 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 CCPG1Q9ULG6 757 aa18.22■□□□□ 0.51
MCF2L-228ENST00000487354 ISY1Q9ULR0 285 aaKnown RBP18.22■□□□□ 0.51
MCF2L-228ENST00000487354 KIAA1217Q5T5P2 1943 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 RBAK-RBAKDNI3L0D1 243 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 TLL1O43897 1013 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 LPXNO60711 386 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 IKQ13123 557 aaPredicted RBP18.21■□□□□ 0.51
MCF2L-228ENST00000487354 BAATQ14032 418 aaPredicted RBP18.21■□□□□ 0.51
MCF2L-228ENST00000487354 TTBK2Q6IQ55 1244 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 PI4K2BQ8TCG2 481 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 CTAGE1Q96RT6 745 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 SLC9A7Q96T83 725 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 C1QTNF1Q9BXJ1 281 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 WDR11Q9BZH6 1224 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 C11orf16Q9NQ32 467 aa18.21■□□□□ 0.51
MCF2L-228ENST00000487354 NBPF20Q3BBV1 942 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 ZMYM1Q5SVZ6 1142 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 BTNL9Q6UXG8 535 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 SLC30A10Q6XR72 485 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 LRFN3Q9BTN0 628 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 NAPBQ9H115 298 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 DCTPP1Q9H773 170 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 POLR3EQ9NVU0 708 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 STX8Q9UNK0 236 aa18.2■□□□□ 0.5
MCF2L-228ENST00000487354 PITPNM1O00562 1244 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 MYL3P08590 195 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 IQCF3P0C7M6 154 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 SUPT20HL2P0C7V6 817 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 CTDSPL2Q05D32 466 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 GPNMBQ14956 572 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 AAK1Q2M2I8 961 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 HERC6Q8IVU3 1022 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 OTUD7AQ8TE49 926 aaPredicted RBP18.19■□□□□ 0.5
MCF2L-228ENST00000487354 CLEC4DQ8WXI8 215 aa18.19■□□□□ 0.5
MCF2L-228ENST00000487354 MTG1Q9BT17 334 aaPredicted RBP18.19■□□□□ 0.5
MCF2L-228ENST00000487354 LOC102724159A0A0B4J2E5 919 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 EDNRBP24530 442 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 RFC2P35250 354 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 SLC16A2P36021 539 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 CPT1AP50416 773 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 GRB10Q13322 594 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 PWP2Q15269 919 aaKnown RBP18.18■□□□□ 0.5
MCF2L-228ENST00000487354 SKIV2LQ15477 1246 aaKnown RBP18.18■□□□□ 0.5
MCF2L-228ENST00000487354 MIER1Q8N108 512 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 OR6J1Q8NGC5 347 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 PHOSPHO2Q8TCD6 241 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 ARNTL2Q8WYA1 636 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 COPS5Q92905 334 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 NACAP1Q9BZK3 213 aa18.18■□□□□ 0.5
MCF2L-228ENST00000487354 LCHNA4D1U4 455 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 A6NJR5 290 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 NFRKBQ6P4R8 1299 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 DCAF4Q8WV16 495 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 GPATCH3Q96I76 525 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 CHMP4BQ9H444 224 aaKnown RBP18.17■□□□□ 0.5
MCF2L-228ENST00000487354 COG5Q9UP83 839 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 MTMR7Q9Y216 660 aa18.17■□□□□ 0.5
MCF2L-228ENST00000487354 TSPY2A6NKD2 308 aa18.16■□□□□ 0.5
MCF2L-228ENST00000487354 GTPBP6O43824 516 aaPredicted RBP18.16■□□□□ 0.5
MCF2L-228ENST00000487354 ARIH2O95376 493 aa18.16■□□□□ 0.5
MCF2L-228ENST00000487354 SLC3A2P08195 630 aaKnown RBP18.16■□□□□ 0.5
MCF2L-228ENST00000487354 FGRP09769 529 aa18.16■□□□□ 0.5
MCF2L-228ENST00000487354 TCTN1Q2MV58 587 aa18.16■□□□□ 0.5
MCF2L-228ENST00000487354 VPS53Q5VIR6 699 aa18.16■□□□□ 0.5
MCF2L-228ENST00000487354 SYDE2Q5VT97 1194 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms