RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SPATA32Q96LK8 384 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 ACAD9Q9H845 621 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 RAVER2Q9HCJ3 691 aaKnown RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 ABT1Q9ULW3 272 aaKnown RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 COL11A1P12107 1806 aaPredicted RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 PFASO15067 1338 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 TCHHQ07283 1943 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 LOC102724159A0A0B4J2E5 919 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 RASSF10A6NK89 507 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 BTBD19C9JJ37 291 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 ALDH1A1P00352 501 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 NCLP19338 710 aaKnown RBP11.59□□□□□ -0.55
USP39-215ENST00000481409 APLP1P51693 650 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 NOGQ13253 232 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 TMEM132BQ14DG7 1078 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 SLC39A14Q15043 492 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 PWP2Q15269 919 aaKnown RBP11.59□□□□□ -0.55
USP39-215ENST00000481409 ARL6IP4Q66PJ3 421 aaKnown RBP11.59□□□□□ -0.55
USP39-215ENST00000481409 PPP4R3AQ6IN85 833 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 XRRA1Q6P2D8 792 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 PIK3AP1Q6ZUJ8 805 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 CPXCR1Q8N123 301 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 LINC00301Q8NCQ3 95 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 AGBL1Q96MI9 1066 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 TRERF1Q96PN7 1200 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 P2RX7Q99572 595 aaKnown RBP11.59□□□□□ -0.55
USP39-215ENST00000481409 SPATC1LQ9H0A9 340 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 MROH8Q9H579 483 aa11.59□□□□□ -0.55
USP39-215ENST00000481409 FAM155AB1AL88 458 aaPredicted RBP11.58□□□□□ -0.56
USP39-215ENST00000481409 OPLAHO14841 1288 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 CYP3A4P08684 503 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 ALAS1P13196 640 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 SREBF1P36956 1147 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 TM4SF4P48230 202 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 SNAP25P60880 206 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 TTC38Q5R3I4 469 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 SMCR8Q8TEV9 937 aaPredicted RBP11.58□□□□□ -0.56
USP39-215ENST00000481409 LEO1Q8WVC0 666 aaPredicted RBP11.58□□□□□ -0.56
USP39-215ENST00000481409 CLEC4DQ8WXI8 215 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 FERMT2Q96AC1 680 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 USP28Q96RU2 1077 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 ANO3Q9BYT9 981 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 RNF146Q9NTX7 359 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 MORF4L1Q9UBU8 362 aa11.58□□□□□ -0.56
USP39-215ENST00000481409 BIN2Q9UBW5 565 aaPredicted RBP11.58□□□□□ -0.56
USP39-215ENST00000481409 CYP3A7-CYP3A51PA0A087WV96 503 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 B4DLN1 442 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 SPTLC2O15270 562 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 STRNO43815 780 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 MBD3O95983 291 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 CFBP00751 764 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 CYP3A7P24462 503 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 CIITAP33076 1130 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 PRPHP41219 470 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 TOB1P50616 345 aaPredicted RBP11.57□□□□□ -0.56
USP39-215ENST00000481409 UBE2HP62256 183 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 STK38Q15208 465 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 SF3A1Q15459 793 aaKnown RBP11.57□□□□□ -0.56
USP39-215ENST00000481409 NFKBIBQ15653 356 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 FAM110CQ1W6H9 321 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 DEFB115Q30KQ5 88 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 JAKMIP3Q5VZ66 844 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 RNF207Q6ZRF8 634 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 ABRAQ8N0Z2 381 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 GPRC5AQ8NFJ5 357 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 DNERQ8NFT8 737 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 TBCKQ8TEA7 893 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 MPHOSPH6Q99547 160 aaKnown RBP11.57□□□□□ -0.56
USP39-215ENST00000481409 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.57□□□□□ -0.56
USP39-215ENST00000481409 CNPY2Q9Y2B0 182 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 FRMPD4Q14CM0 1322 aa11.57□□□□□ -0.56
USP39-215ENST00000481409 GOLGA6L4A6NEF3 574 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 TBX3O15119 743 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 FIBPO43427 364 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 STAM2O75886 525 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 ERVK-9P63128 1117 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 ERVK-24P63145 666 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 ATP2C1P98194 919 aaPredicted RBP11.56□□□□□ -0.56
USP39-215ENST00000481409 PLS1Q14651 629 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 PTPAQ15257 358 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 INF2Q27J81 1249 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 EARS2Q5JPH6 523 aaKnown RBP11.56□□□□□ -0.56
USP39-215ENST00000481409 ADALQ6DHV7 355 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 FAM173BQ6P4H8 233 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 USP17L6PQ6QN14 398 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 IFNL1Q8IU54 200 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 ZNF579Q8NAF0 562 aaKnown RBP11.56□□□□□ -0.56
USP39-215ENST00000481409 CRYGNQ8WXF5 182 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 ANP32EQ9BTT0 268 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 BTBD7Q9P203 1132 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 TFIP11Q9UBB9 837 aaKnown RBP11.56□□□□□ -0.56
USP39-215ENST00000481409 RBPJLQ9UBG7 517 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 RPTORQ8N122 1335 aa11.56□□□□□ -0.56
USP39-215ENST00000481409 A0A1W2PQ27 194 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 A0A1W2PQ64 194 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 A0A1W2PQD8 194 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 CUTAO60888 179 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 CNMDO75829 334 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 MAP2K2P36507 400 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 RPS6P62753 249 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms