RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 FAM196AQ6ZSG2 479 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 KYQ8NBH2 561 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 DHRS1Q96LJ7 313 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 LRRC3Q9BY71 257 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 CD248Q9HCU0 757 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 PCDHB14Q9Y5E9 798 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 USP31Q70CQ4 1352 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 BRD1O95696 1058 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 POLR2BP30876 1174 aaKnown RBP4.09□□□□□ -1.75
CCDC39-203ENST00000473854 LRRFIP1Q32MZ4 808 aaKnown RBP4.09□□□□□ -1.75
CCDC39-203ENST00000473854 PALM2Q8IXS6 379 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 C7orf61Q8IZ16 206 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 GOLM1Q8NBJ4 401 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 DNERQ8NFT8 737 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 PTCHD1Q96NR3 888 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 DUSP9Q99956 384 aaKnown RBP4.09□□□□□ -1.75
CCDC39-203ENST00000473854 C11orf84Q9BUA3 381 aaPredicted RBP4.09□□□□□ -1.75
CCDC39-203ENST00000473854 ZNF341Q9BYN7 854 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 LTBP3Q9NS15 1303 aa4.09□□□□□ -1.75
CCDC39-203ENST00000473854 PPFIA2O75334 1257 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 ITGAEP38570 1179 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 ABHD18Q0P651 414 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 MCTP2Q6DN12 878 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 ZC3H18Q86VM9 953 aaKnown RBP4.08□□□□□ -1.76
CCDC39-203ENST00000473854 LZTR1Q8N653 840 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 TXNDC5Q8NBS9 432 aaKnown RBP4.08□□□□□ -1.76
CCDC39-203ENST00000473854 SMARCC1Q92922 1105 aaPredicted RBP4.08□□□□□ -1.76
CCDC39-203ENST00000473854 ATG4CQ96DT6 458 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 DDX11Q96FC9 970 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 SLC6A18Q96N87 628 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 PPP4R1LQ9P1A2 415 aa4.08□□□□□ -1.76
CCDC39-203ENST00000473854 ING1Q9UK53 422 aaPredicted RBP4.08□□□□□ -1.76
CCDC39-203ENST00000473854 SF3B6Q9Y3B4 125 aaKnown RBP4.08□□□□□ -1.76
CCDC39-203ENST00000473854 TNFRSF10CO14798 259 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 TGM1P22735 817 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 PSMD2Q13200 908 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 HS1BP3Q53T59 392 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 NOL9Q5SY16 702 aaKnown RBP4.07□□□□□ -1.76
CCDC39-203ENST00000473854 C9orf131Q5VYM1 1079 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 ZNF585AQ6P3V2 769 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 ETV3LQ6ZN32 361 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 AMER2Q8N7J2 671 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 GORASP1Q9BQQ3 440 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 EHMT1Q9H9B1 1298 aa4.07□□□□□ -1.76
CCDC39-203ENST00000473854 NGRNQ9NPE2 291 aaKnown RBP4.07□□□□□ -1.76
CCDC39-203ENST00000473854 EPHB4P54760 987 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 POU4F1Q01851 419 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 FAM160A1Q05DH4 1040 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 R3HDM1Q15032 1099 aaKnown RBP4.06□□□□□ -1.76
CCDC39-203ENST00000473854 SPDYAQ5MJ70 313 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 EEF1DP3Q658K8 133 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 ARHGEF18Q6ZSZ5 1173 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 TMEM192Q8IY95 271 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 CCDC144CPQ8IYA2 1237 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 CHFRQ96EP1 664 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 C1orf115Q9H7X2 142 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 JADE2Q9NQC1 790 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 SUCOQ9UBS9 1254 aaKnown RBP4.06□□□□□ -1.76
CCDC39-203ENST00000473854 FHOD1Q9Y613 1164 aa4.06□□□□□ -1.76
CCDC39-203ENST00000473854 MEIS3P2A8K0S8 358 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 PATE3B3GLJ2 98 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 H0Y8X5 98 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 GPR42O15529 346 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 B4GALT3O60512 393 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 CYP7B1O75881 506 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 CYP1A1P04798 512 aaPredicted RBP4.05□□□□□ -1.76
CCDC39-203ENST00000473854 C8BP07358 591 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 NME1P15531 152 aaKnown RBP4.05□□□□□ -1.76
CCDC39-203ENST00000473854 PPP2CBP62714 309 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 PPP2CAP67775 309 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 SLFN13Q68D06 897 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 WWC2Q6AWC2 1192 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 RCSD1Q6JBY9 416 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 DCP2Q8IU60 420 aaKnown RBP4.05□□□□□ -1.76
CCDC39-203ENST00000473854 REXO1Q8N1G1 1221 aaKnown RBP4.05□□□□□ -1.76
CCDC39-203ENST00000473854 FBXO27Q8NI29 283 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 BCAS3Q9H6U6 928 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 BRMS1Q9HCU9 246 aa4.05□□□□□ -1.76
CCDC39-203ENST00000473854 SUPT16HQ9Y5B9 1047 aaKnown RBP4.05□□□□□ -1.76
CCDC39-203ENST00000473854 F6X3S4 739 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 DDX3XO00571 662 aaKnown RBP eCLIP4.04□□□□□ -1.76
CCDC39-203ENST00000473854 TLR3O15455 904 aaKnown RBP4.04□□□□□ -1.76
CCDC39-203ENST00000473854 ZNF623O75123 536 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 DAB2P98082 770 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 DPTQ07507 201 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 ANKRD39Q53RE8 183 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 EAPPQ56P03 285 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-203ENST00000473854 PRAMEF18Q5VWM3 479 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 IGDCC4Q8TDY8 1250 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 USP33Q8TEY7 942 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 FCRL3Q96P31 734 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-203ENST00000473854 CEP89Q96ST8 783 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 KCNQ5Q9NR82 932 aa4.04□□□□□ -1.76
CCDC39-203ENST00000473854 TRBV23OR9-2A0A075B6M9 112 aa4.03□□□□□ -1.76
CCDC39-203ENST00000473854 CD3EP07766 207 aa4.03□□□□□ -1.76
CCDC39-203ENST00000473854 ACRP10323 421 aa4.03□□□□□ -1.76
CCDC39-203ENST00000473854 GARTP22102 1010 aa4.03□□□□□ -1.76
CCDC39-203ENST00000473854 MCM7P33993 719 aa4.03□□□□□ -1.76
CCDC39-203ENST00000473854 FOXE3Q13461 319 aa4.03□□□□□ -1.76
CCDC39-203ENST00000473854 MIIPQ5JXC2 388 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms