RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CFBP00751 764 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 HOXA13P31271 388 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-209ENST00000469852 RPS6P62753 249 aaKnown RBP17.03■□□□□ 0.32
COL9A3-209ENST00000469852 KCTD2Q14681 263 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 ZNF713Q8N859 430 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-209ENST00000469852 NPLOC4Q8TAT6 608 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 TRIM17Q9Y577 477 aa17.03■□□□□ 0.32
COL9A3-209ENST00000469852 DDX49Q9Y6V7 483 aaKnown RBP17.03■□□□□ 0.32
COL9A3-209ENST00000469852 MEIS2O14770 477 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 STRNO43815 780 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 CALML3P27482 149 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 GJB2P29033 226 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 FLT3LGP49771 235 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 HSD17B4P51659 736 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 GHRHRQ02643 423 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 MAP2K5Q13163 448 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 NPY5RQ15761 445 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 UBE2SQ16763 222 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 PPP1R18Q6NYC8 613 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 USP17L6PQ6QN14 398 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 RNF207Q6ZRF8 634 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 CTU1Q7Z7A3 348 aaKnown RBP17.02■□□□□ 0.32
COL9A3-209ENST00000469852 ABRAQ8N0Z2 381 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 SYTL5Q8TDW5 730 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-209ENST00000469852 SRRDQ9UH36 339 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 KCNJ14Q9UNX9 436 aa17.02■□□□□ 0.32
COL9A3-209ENST00000469852 SOWAHBA6NEL2 793 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 SMCO2A6NFE2 343 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 CYP2B6P20813 491 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 HMGN5P82970 282 aaKnown RBP17.01■□□□□ 0.31
COL9A3-209ENST00000469852 TRAF1Q13077 416 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 CCL14Q16627 93 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 ZNF792Q3KQV3 632 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 FAM133AQ8N9E0 248 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 SPRYD3Q8NCJ5 442 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 RGS22Q8NE09 1264 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 NUDT12Q9BQG2 462 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 ZMYND12Q9H0C1 365 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 PSTPIP2Q9H939 334 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 FLRT1Q9NZU1 646 aa17.01■□□□□ 0.31
COL9A3-209ENST00000469852 PFASO15067 1338 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 ESYT2A0FGR8 921 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 LRRC37A2A6NM11 1700 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 ADCY7P51828 1080 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 SOX10P56693 466 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 GUCY1B3Q02153 619 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 MCF2L2Q86YR7 1114 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 SOCS4Q8WXH5 440 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 PHF20Q9BVI0 1012 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 RIC8AQ9NPQ8 531 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 SH3GLB2Q9NR46 395 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 TMEM260Q9NX78 707 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 SMC3Q9UQE7 1217 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 ZSCAN21Q9Y5A6 473 aaPredicted RBP17■□□□□ 0.31
COL9A3-209ENST00000469852 MCM3APO60318 1980 aa17■□□□□ 0.31
COL9A3-209ENST00000469852 POTEB2H3BUK9 544 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 GCOM1H8Y6P7 765 aaPredicted RBP16.99■□□□□ 0.31
COL9A3-209ENST00000469852 POLR2MP0CAP2 368 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 RGS2P41220 211 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 NLRP5P59047 1200 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 DPP9Q86TI2 863 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 RASGRP4Q8TDF6 673 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 WASF1Q92558 559 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 CUL5Q93034 780 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 INTS4Q96HW7 963 aaKnown RBP16.99■□□□□ 0.31
COL9A3-209ENST00000469852 PGBD1Q96JS3 809 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 TAAR1Q96RJ0 339 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 APBA2Q99767 749 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 PTCH2Q9Y6C5 1203 aa16.99■□□□□ 0.31
COL9A3-209ENST00000469852 PIK3CDO00329 1044 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 GNRH1P01148 92 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 HOXC6P09630 235 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 CLK2P49760 499 aaKnown RBP16.98■□□□□ 0.31
COL9A3-209ENST00000469852 KRT40Q6A162 431 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 FCHSD1Q86WN1 690 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 FAM184AQ8NB25 1140 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 CCDC148Q8NFR7 591 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 OXER1Q8TDS5 423 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 CCDC12Q8WUD4 166 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-209ENST00000469852 MAML3Q96JK9 1138 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 BIN2Q9UBW5 565 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-209ENST00000469852 PTPN22Q9Y2R2 807 aa16.98■□□□□ 0.31
COL9A3-209ENST00000469852 CENPFP49454 3210 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 IGHA2P01877 340 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 ELNP15502 786 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 HOXD10P28358 340 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 UBXN2AP68543 259 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 IRF5Q13568 498 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 JAKMIP3Q5VZ66 844 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 TRIB2Q92519 343 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 C8orf76Q96K31 380 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 C6orf50Q9HD87 102 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 PCDHA4Q9UN74 947 aa16.97■□□□□ 0.31
COL9A3-209ENST00000469852 RBM19Q9Y4C8 960 aaKnown RBP16.97■□□□□ 0.31
COL9A3-209ENST00000469852 M0R2N6 131 aa16.96■□□□□ 0.31
COL9A3-209ENST00000469852 MMP1P03956 469 aa16.96■□□□□ 0.31
COL9A3-209ENST00000469852 ALDH5A1P51649 535 aaPredicted RBP16.96■□□□□ 0.31
COL9A3-209ENST00000469852 MRPL12P52815 198 aaKnown RBP16.96■□□□□ 0.31
COL9A3-209ENST00000469852 TRIM32Q13049 653 aa16.96■□□□□ 0.31
COL9A3-209ENST00000469852 ARHGEF6Q15052 776 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms