RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RAVER2Q9HCJ3 691 aaKnown RBP8.21□□□□□ -1.1
SYNE1-213ENST00000448038 PLSCR1O15162 318 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 KIF4AO95239 1232 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 TNFAIP3P21580 790 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 AP3B2Q13367 1082 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 TAX1BP1Q86VP1 789 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 TIGD1Q96MW7 591 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 XPO4Q9C0E2 1151 aaKnown RBP8.21□□□□□ -1.1
SYNE1-213ENST00000448038 SEPT9Q9UHD8 586 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-213ENST00000448038 GOLGA6L10A0A0M3HER8 536 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 FGFR2P21802 821 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 LIG4P49917 911 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 IGBP1P78318 339 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 DMP1Q13316 513 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ASIC2Q16515 512 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF569Q5MCW4 686 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 GSDMAQ96QA5 445 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 GPR75-ASB3A0A0A6YYF3 556 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 KCNJ18B7U540 433 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L15C9J2P7 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L13C9JLJ4 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L11C9JVI0 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L18D6R9N7 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L22D6RA61 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L17D6RBQ6 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L19D6RCP7 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L20D6RJB6 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 POLRMTO00411 1230 aaKnown RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 TNNI1P19237 187 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L24Q0WX57 530 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 KCNJ12Q14500 433 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ODR4Q5SWX8 454 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 CCDC122Q5T0U0 273 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 USP17L6PQ6QN14 398 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 CYP26C1Q6V0L0 522 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ADGRF4Q8IZF3 695 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 STAG2Q8N3U4 1231 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 IL25Q9H293 177 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 SERPINA10Q9UK55 444 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 PCDHA6Q9UN73 950 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 PCDHA8Q9Y5H6 950 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 LRRIQ4A6NIV6 560 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 RGL2O15211 777 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 SLFN14P0C7P3 912 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 XRCC5P13010 732 aaKnown RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 GMPSP49915 693 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 KIAA0753Q2KHM9 967 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ARL6IP4Q66PJ3 421 aaKnown RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 KIF2CQ99661 725 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 MTMR4Q9NYA4 1195 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 IMPACTQ9P2X3 320 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 MON2Q7Z3U7 1717 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 H0YCG3 227 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 MEIS1O00470 390 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 TUBB4AP04350 444 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ACTN2P35609 894 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 QRICH1Q2TAL8 776 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 TXNRD3Q86VQ6 643 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 GOLGA5Q8TBA6 731 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 OXER1Q8TDS5 423 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 OTUD5Q96G74 571 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 RNF216Q9NWF9 866 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 STK17AQ9UEE5 414 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 STX10O60499 249 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 KRT19P08727 400 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 TMOD1P28289 359 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 GBP2P32456 591 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 PTF1AQ7RTS3 328 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 HOOK3Q86VS8 718 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 GRAMD1CQ8IYS0 662 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 IGDCC4Q8TDY8 1250 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 EPSTI1Q96J88 318 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 NACC1Q96RE7 527 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 FAM207AQ9NSI2 230 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 FANCLQ9NW38 375 aa8.2□□□□□ -1.1
SYNE1-213ENST00000448038 ARMCX3Q9UH62 379 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 MED1Q15648 1581 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-213ENST00000448038 CTAGE15A4D2H0 777 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 CTAGE8P0CG41 777 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SLC9C1Q4G0N8 1177 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 MIS18BP1Q6P0N0 1132 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 CTAGE6Q86UF2 777 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 CTAGE4Q8IX94 777 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 PRPF38AQ8NAV1 312 aaKnown RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 FERMT1Q9BQL6 677 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 BARHL2Q9NY43 387 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SPATA1Q5VX52 437 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SNRNP48Q6IEG0 339 aaKnown RBP8.19□□□□□ -1.1
SYNE1-213ENST00000448038 C16orf86Q6ZW13 317 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 GPIHBP1Q8IV16 184 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 ANKRD26Q9UPS8 1709 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 GRIN3BO60391 1043 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 SPECC1LQ69YQ0 1117 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 FAM151AQ8WW52 585 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 PRIMPOLQ96LW4 560 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 RMDN3Q96TC7 470 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 TSGA10Q9BZW7 698 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 MYOZ2Q9NPC6 264 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 PIK3C2AO00443 1686 aa8.19□□□□□ -1.1
SYNE1-213ENST00000448038 BCRP11274 1271 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms