RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PLEKP08567 350 aaPredicted RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 SARSP49591 514 aaKnown RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 NT5C2P49902 561 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 RNASE9P60153 205 aaKnown RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 ARHGAP29Q52LW3 1261 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 ZNF569Q5MCW4 686 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 PDXDC2PQ6P474 469 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 DGKHQ86XP1 1220 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 CCDC150Q8NCX0 1101 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 FBXO28Q9NVF7 368 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 PAXBP1Q9Y5B6 917 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 CCDC88AQ3V6T2 1871 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 MAST2Q6P0Q8 1798 aa9.4□□□□□ -0.91
CD44-208ENST00000428726 MKI67P46013 3256 aaKnown RBP9.4□□□□□ -0.91
CD44-208ENST00000428726 NHSQ6T4R5 1651 aa9.4□□□□□ -0.91
CD44-208ENST00000428726 KCNJ18B7U540 433 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 ECE2O60344 883 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 BMP15O95972 392 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 KRT9P35527 623 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 TXLNAP40222 546 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 PDE4CQ08493 712 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 KCNJ12Q14500 433 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 NONOQ15233 471 aaKnown RBP eCLIP9.39□□□□□ -0.91
CD44-208ENST00000428726 C4orf32Q8N8J7 132 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 MLKLQ8NB16 471 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 ACER1Q8TDN7 264 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 SNX29Q8TEQ0 813 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 JMJD4Q9H9V9 463 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 DISC1Q9NRI5 854 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 LRWD1Q9UFC0 647 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 CBFA2T2O43439 604 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 NRDCO43847 1150 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 RHOXF2BP0C7M4 288 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 SHMT1P34896 483 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 PAK1Q13153 545 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 E2F4Q16254 413 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 CALCRLQ16602 461 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 PRR16Q569H4 304 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 C16orf86Q6ZW13 317 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 SH3BP5LQ7L8J4 393 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 CPXCR1Q8N123 301 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 MNS1Q8NEH6 495 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 TEKT1Q969V4 418 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 P2RX7Q99572 595 aaKnown RBP9.39□□□□□ -0.91
CD44-208ENST00000428726 RHOXF2Q9BQY4 288 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 NLRC4Q9NPP4 1024 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 KCND1Q9NSA2 647 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 TCP11L1Q9NUJ3 509 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 PCDHA1Q9Y5I3 950 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 LAMB1P07942 1786 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 CFBP00751 764 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 GYPCP04921 128 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 MTIF2P46199 727 aaKnown RBP9.39□□□□□ -0.91
CD44-208ENST00000428726 SP4Q02446 784 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 ANKRD40Q6AI12 368 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 NYAP1Q6ZVC0 841 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 REXO1L1PQ8IX06 675 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 CSGALNACT2Q8N6G5 542 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 NEDD1Q8NHV4 660 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 KIFC2Q96AC6 838 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 PURBQ96QR8 312 aaKnown RBP9.39□□□□□ -0.91
CD44-208ENST00000428726 SUGCTQ9HAC7 445 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 SMARCAL1Q9NZC9 954 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 DACH1Q9UI36 760 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 ATP6V0A2Q9Y487 856 aa9.39□□□□□ -0.91
CD44-208ENST00000428726 SMCHD1A6NHR9 2005 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 POTEB3A0JP26 581 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 MACROD2A1Z1Q3 448 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 POTECB2RU33 542 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 EGFRP00533 1210 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 OR52Z1P0C646 297 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 MATR3P43243 847 aaKnown RBP eCLIP9.38□□□□□ -0.91
CD44-208ENST00000428726 CRY2Q49AN0 593 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 CERKLQ49MI3 558 aaPredicted RBP9.38□□□□□ -0.91
CD44-208ENST00000428726 NT5DC1Q5TFE4 455 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 SPATA1Q5VX52 437 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 POTEBQ6S5H4 581 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 TMC4Q7Z404 712 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 NEK8Q86SG6 692 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 TRIML1Q8N9V2 468 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 PROCA1Q8NCQ7 364 aaPredicted RBP9.38□□□□□ -0.91
CD44-208ENST00000428726 TMEM39BQ9GZU3 492 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 C6orf50Q9HD87 102 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 AKR1B15C9JRZ8 316 aaPredicted RBP9.38□□□□□ -0.91
CD44-208ENST00000428726 ZNF18P17022 549 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 PSMC6P62333 389 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 ENOX1Q8TC92 643 aaKnown RBP9.38□□□□□ -0.91
CD44-208ENST00000428726 PIGOQ8TEQ8 1089 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 FERMT2Q96AC1 680 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 CSRNP1Q96S65 589 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 ZNF446Q9NWS9 450 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 KIAA1024Q9UPX6 916 aa9.38□□□□□ -0.91
CD44-208ENST00000428726 TTC26A0AVF1 554 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 POTEFA5A3E0 1075 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 MYMKA6NI61 221 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 H0YIN7 160 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 EPHB6O15197 1021 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 POTEIP0CG38 1075 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 IL1R1P14778 569 aa9.37□□□□□ -0.91
CD44-208ENST00000428726 CALML3P27482 149 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms