RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 TMEM200AQ86VY9 491 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 AEBP1Q8IUX7 1158 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 SMG7Q92540 1137 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ACDQ96AP0 544 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 POLMQ9NP87 494 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 KCND1Q9NSA2 647 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 HS3ST3A1Q9Y663 406 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ABCC1P33527 1531 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CEP170Q5SW79 1584 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ASB14A6NK59 587 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RTL1A6NKG5 1358 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 NEMP1O14524 444 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ABCC5O15440 1437 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 KLK10O43240 276 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PEX14O75381 377 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MYBP10242 640 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PEPDP12955 493 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 BMP8BP34820 402 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 IL12RB1P42701 662 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MMP14P50281 582 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CPT1AP50416 773 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CLCN6P51797 869 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MYOM2P54296 1465 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 URB2Q14146 1524 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 EEA1Q15075 1411 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PRRC2BQ5JSZ5 2229 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CCDC158Q5M9N0 1113 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 WDR45BQ5MNZ6 344 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PLPP4Q5VZY2 271 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF852Q6ZMS4 543 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 LPCAT2Q7L5N7 544 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CEP57Q86XR8 500 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 FTSJ3Q8IY81 847 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 NRSN1Q8IZ57 195 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 SUN3Q8TAQ9 357 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ARMC5Q96C12 935 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF333Q96JL9 665 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CEP89Q96ST8 783 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 OXCT2Q9BYC2 517 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 C12orf65Q9H3J6 166 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 THSD1Q9NS62 852 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MRPS23Q9Y3D9 190 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MED14O60244 1454 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CRB1P82279 1406 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ARHGAP10A1A4S6 786 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ASNSP08243 561 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RARAP10276 462 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 HCLS1P14317 486 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 TARSP26639 723 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 NRIP1P48552 1158 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 IGBP1P78318 339 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RELBQ01201 579 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 STRN3Q13033 797 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 SCGB2A2Q13296 93 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 FKBP5Q13451 457 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 FGL2Q14314 439 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 STAT4Q14765 748 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 GPATCH3Q96I76 525 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MTMR9Q96QG7 549 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 LSM14BQ9BX40 385 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RPF1Q9H9Y2 349 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PCDHB6Q9Y5E3 794 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PPIP5K1Q6PFW1 1433 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF541Q9H0D2 1346 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 USP17L5A8MUK1 530 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 C2CD2LO14523 706 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MYL4P12829 197 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 IFNAR2P48551 515 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ARRB1P49407 418 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ADCY1Q08828 1119 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PLCB4Q15147 1175 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 GNPTABQ3T906 1256 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RSBN1LQ6PCB5 846 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 KIAA1324Q6UXG2 1013 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 NOP9Q86U38 636 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RPAINQ86UA6 219 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CAND1Q86VP6 1230 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ADHFE1Q8IWW8 467 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 GDPD5Q8WTR4 605 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 KCNE4Q8WWG9 221 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 USP7Q93009 1102 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 EYA1Q99502 592 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PHF20Q9BVI0 1012 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 IL23AQ9NPF7 189 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 GABBR1Q9UBS5 961 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ALG6Q9Y672 507 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 CADP27708 2225 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 TECPR2O15040 1411 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 MST1RQ04912 1400 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 TNS3Q68CZ2 1445 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 MED19A0JLT2 244 aaPredicted RBP3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 ARHGEF37A1IGU5 675 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 FAM170BA6NMN3 283 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 CXCL11O14625 94 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 TPH1P17752 444 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 RABGGTBP53611 331 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 PDE1BQ01064 536 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 BIRC3Q13489 604 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 MTERF2Q49AM1 385 aa3.15□□□□□ -1.9
CCDC88A-205ENST00000426576 EPC2Q52LR7 807 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms