RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CDV3Q9UKY7 258 aaKnown RBP7.46□□□□□ -1.21
SCN1A-204ENST00000423058 PARD3Q8TEW0 1356 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 NSFP46459 744 aaKnown RBP7.46□□□□□ -1.22
SCN1A-204ENST00000423058 RRAGAQ7L523 313 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 RDH13Q8NBN7 331 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 APOL6Q9BWW8 343 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 ARMCX3Q9UH62 379 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-204ENST00000423058 KDM2BQ8NHM5 1336 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 ERVV-2B6SEH9 535 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SGK1O00141 431 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SERPINB6P35237 376 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 MFAP3P55082 362 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 IL1RL1Q01638 556 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 PDXDC1Q6P996 788 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 EFHBQ8N7U6 833 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 FBXL13Q8NEE6 735 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 CABS1Q96KC9 395 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 PASKQ96RG2 1323 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 KRIT1O00522 736 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SART1O43290 800 aaKnown RBP7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SRGAP2CP0DJJ0 459 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 PPP4R4Q6NUP7 873 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 FRA10AC1Q70Z53 315 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 NLGN1Q8N2Q7 840 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 LRRC37BQ96QE4 947 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SMYD2Q9NRG4 433 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 YEATS2Q9ULM3 1422 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 TCP10L2B9ZVM9 353 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 DPYSL4O14531 572 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SYF2O95926 243 aaKnown RBP7.46□□□□□ -1.22
SCN1A-204ENST00000423058 ARL4AP40617 200 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 KRT71Q3SY84 523 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 HSP90AA5PQ58FG0 334 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 HP1BP3Q5SSJ5 553 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-204ENST00000423058 TADA2BQ86TJ2 420 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 ASXL2Q76L83 1435 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SYNJ2BP-COX16A0A087WUM0 186 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 ICA1Q05084 483 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 LRMPQ12912 555 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 MYLK4Q86YV6 388 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-204ENST00000423058 KLHL7Q8IXQ5 586 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 GDAP1Q8TB36 358 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 SLC52A2Q9HAB3 445 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 COX16Q9P0S2 106 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 STK17AQ9UEE5 414 aa7.46□□□□□ -1.22
SCN1A-204ENST00000423058 APOEP02649 317 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 SOX5P35711 763 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 SPATS2Q86XZ4 545 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ARHGEF1Q92888 912 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 NUDCD1Q96RS6 583 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 TRPV6Q9H1D0 765 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF532Q9HCE3 1301 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 BIVM-ERCC5R4GMW8 1640 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 LAD1O00515 517 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 NPR1P16066 1061 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 RPS8P62241 208 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 PRKCQQ04759 706 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 KAZNQ674X7 775 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 CEP85Q6P2H3 762 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 DNAAF3Q8N9W5 541 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 MGARPQ8TDB4 240 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 U2AF1L4Q8WU68 220 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 CCDC17Q96LX7 622 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 CPP00450 1065 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 PRIM1P49642 420 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 MTHFSDQ2M296 383 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 TYW1BQ6NUM6 668 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 PLA2G4DQ86XP0 818 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 CXorf38Q8TB03 319 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ERO1AQ96HE7 468 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 PIDD1Q9HB75 910 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 XAB2Q9HCS7 855 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 IPO5O00410 1097 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 SLC27A2O14975 620 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 GAP43P17677 238 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 MX2P20592 715 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 PDE1BQ01064 536 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 GPATCH4Q5T3I0 446 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 NELFCDQ8IXH7 590 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 DCLK2Q8N568 766 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ENOX1Q8TC92 643 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 FTOQ9C0B1 505 aaKnown RBP eCLIP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 DDX41Q9UJV9 622 aaKnown RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 HOXC9P31274 260 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ASPRV1Q53RT3 343 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ZSCAN10Q96SZ4 725 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ABCC10Q5T3U5 1492 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 SBNO1A3KN83 1393 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 STAT2P52630 851 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 ESRRGP62508 458 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 LRCH2Q5VUJ6 765 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 RFX6Q8HWS3 928 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 SIX6OS1Q8N1H7 587 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 C2orf69Q8N8R5 385 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 LRRC8CQ8TDW0 803 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 GDAP1L1Q96MZ0 367 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 MID2Q9UJV3 735 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 TLK1Q9UKI8 766 aa7.45□□□□□ -1.22
SCN1A-204ENST00000423058 GCC2Q8IWJ2 1684 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 KCNA4P22459 653 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms