RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 RRP36Q96EU6 259 aaKnown RBP21.6■■□□□ 1.05
PTCD3-204ENST00000418628 KATNBL1Q9H079 304 aa21.6■■□□□ 1.05
PTCD3-204ENST00000418628 HMX1Q9NP08 348 aaPredicted RBP21.6■■□□□ 1.05
PTCD3-204ENST00000418628 PCDHA1Q9Y5I3 950 aa21.6■■□□□ 1.05
PTCD3-204ENST00000418628 SNAI1O95863 264 aaPredicted RBP21.59■■□□□ 1.05
PTCD3-204ENST00000418628 ADD1P35611 737 aaKnown RBP21.59■■□□□ 1.05
PTCD3-204ENST00000418628 GJA8P48165 433 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 HSD17B4P51659 736 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 SOX10P56693 466 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 TRAF1Q13077 416 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 IFFO2Q5TF58 517 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 SAMD3Q8N6K7 520 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 C22orf23Q9BZE7 217 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 CRISPLD2Q9H0B8 497 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 RNF208Q9H0X6 261 aa21.59■■□□□ 1.05
PTCD3-204ENST00000418628 CCDC196A0A1B0GTZ2 297 aa21.58■■□□□ 1.05
PTCD3-204ENST00000418628 ARMCX2Q7L311 632 aa21.58■■□□□ 1.05
PTCD3-204ENST00000418628 TBC1D5Q92609 795 aa21.58■■□□□ 1.05
PTCD3-204ENST00000418628 PURBQ96QR8 312 aaKnown RBP21.58■■□□□ 1.05
PTCD3-204ENST00000418628 COL20A1Q9P218 1284 aa21.58■■□□□ 1.05
PTCD3-204ENST00000418628 TNRC18O15417 2968 aaPredicted RBP21.58■■□□□ 1.04
PTCD3-204ENST00000418628 PTPDC1A2A3K4 754 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 MYCP01106 439 aaPredicted RBP21.57■■□□□ 1.04
PTCD3-204ENST00000418628 ZNF865P0CJ78 1059 aaPredicted RBP21.57■■□□□ 1.04
PTCD3-204ENST00000418628 EDNRBP24530 442 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 RGS19P49795 217 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 ALDH5A1P51649 535 aaPredicted RBP21.57■■□□□ 1.04
PTCD3-204ENST00000418628 AK2P54819 239 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 MCF2L2Q86YR7 1114 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 DNERQ8NFT8 737 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 SYTL5Q8TDW5 730 aaPredicted RBP21.57■■□□□ 1.04
PTCD3-204ENST00000418628 TMEM106CQ9BVX2 250 aa21.57■■□□□ 1.04
PTCD3-204ENST00000418628 MAP3K20Q9NYL2 800 aaKnown RBP21.57■■□□□ 1.04
PTCD3-204ENST00000418628 SEC63Q9UGP8 760 aaKnown RBP21.57■■□□□ 1.04
PTCD3-204ENST00000418628 CAPN2P17655 700 aa21.56■■□□□ 1.04
PTCD3-204ENST00000418628 LHX8Q68G74 356 aa21.56■■□□□ 1.04
PTCD3-204ENST00000418628 U2AF1L4Q8WU68 220 aaKnown RBP21.56■■□□□ 1.04
PTCD3-204ENST00000418628 BACH2Q9BYV9 841 aa21.56■■□□□ 1.04
PTCD3-204ENST00000418628 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.56■■□□□ 1.04
PTCD3-204ENST00000418628 TPCN1Q9ULQ1 816 aa21.56■■□□□ 1.04
PTCD3-204ENST00000418628 FRMPD4Q14CM0 1322 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 WDR81Q562E7 1941 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 hCG_1642624A0A1W2PR95 340 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 ASB14A6NK59 587 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 hCG_1984214I3L0E3 225 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 SGPL1O95470 568 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 IFNAR1P17181 557 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 ANKRD1Q15327 319 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 CCDC82Q8N4S0 544 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 ZNF713Q8N859 430 aaPredicted RBP21.55■■□□□ 1.04
PTCD3-204ENST00000418628 PIBF1Q8WXW3 757 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 TBC1D32Q96NH3 1257 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 DEFB118Q96PH6 123 aa21.55■■□□□ 1.04
PTCD3-204ENST00000418628 NCOA5Q9HCD5 579 aaKnown RBP21.55■■□□□ 1.04
PTCD3-204ENST00000418628 ADD3Q9UEY8 706 aaKnown RBP21.55■■□□□ 1.04
PTCD3-204ENST00000418628 SEPT4O43236 478 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 CALML3P27482 149 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 NEK4P51957 841 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 PRAMEF19Q5SWL8 479 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 WWC2Q6AWC2 1192 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 TYW1BQ6NUM6 668 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 UBE2Q1Q7Z7E8 422 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 LARP6Q9BRS8 491 aaKnown RBP21.54■■□□□ 1.04
PTCD3-204ENST00000418628 RNF26Q9BY78 433 aaPredicted RBP21.54■■□□□ 1.04
PTCD3-204ENST00000418628 ABHD16BQ9H3Z7 469 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 DDX20Q9UHI6 824 aaKnown RBP21.54■■□□□ 1.04
PTCD3-204ENST00000418628 OGDHLQ9ULD0 1010 aa21.54■■□□□ 1.04
PTCD3-204ENST00000418628 NAP1L2Q9ULW6 460 aaPredicted RBP21.54■■□□□ 1.04
PTCD3-204ENST00000418628 PIK3CDO00329 1044 aa21.53■■□□□ 1.04
PTCD3-204ENST00000418628 PRPF3O43395 683 aaKnown RBP21.53■■□□□ 1.04
PTCD3-204ENST00000418628 MSCO60682 206 aa21.53■■□□□ 1.04
PTCD3-204ENST00000418628 PFKFB2O60825 505 aa21.53■■□□□ 1.04
PTCD3-204ENST00000418628 EN2P19622 333 aaPredicted RBP21.53■■□□□ 1.04
PTCD3-204ENST00000418628 CCT2P78371 535 aaKnown RBP21.53■■□□□ 1.04
PTCD3-204ENST00000418628 PKN1Q16512 942 aa21.53■■□□□ 1.04
PTCD3-204ENST00000418628 PPP1R18Q6NYC8 613 aa21.53■■□□□ 1.04
PTCD3-204ENST00000418628 GPKOWQ92917 476 aaPredicted RBP eCLIP21.53■■□□□ 1.042e-6■■□□□ 13
PTCD3-204ENST00000418628 RBM27Q9P2N5 1060 aaKnown RBP21.53■■□□□ 1.04
PTCD3-204ENST00000418628 DDX49Q9Y6V7 483 aaKnown RBP21.53■■□□□ 1.04
PTCD3-204ENST00000418628 STXBP3O00186 592 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 CAPN15O75808 1086 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 LARGE1O95461 756 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 CFBP00751 764 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 MNX1P50219 401 aaPredicted RBP21.52■■□□□ 1.04
PTCD3-204ENST00000418628 SCRN1Q12765 414 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 PFKFB3Q16875 520 aaPredicted RBP21.52■■□□□ 1.04
PTCD3-204ENST00000418628 TEX2Q8IWB9 1127 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 TAAR1Q96RJ0 339 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 CNPY2Q9Y2B0 182 aa21.52■■□□□ 1.04
PTCD3-204ENST00000418628 V9GY48 417 aaPredicted RBP21.52■■□□□ 1.04
PTCD3-204ENST00000418628 MEIS2O14770 477 aa21.51■■□□□ 1.03
PTCD3-204ENST00000418628 ADCY6O43306 1168 aa21.51■■□□□ 1.03
PTCD3-204ENST00000418628 ACVR2BQ13705 512 aa21.51■■□□□ 1.03
PTCD3-204ENST00000418628 ME3Q16798 604 aa21.51■■□□□ 1.03
PTCD3-204ENST00000418628 PHKBQ93100 1093 aa21.51■■□□□ 1.03
PTCD3-204ENST00000418628 BARHL2Q9NY43 387 aa21.51■■□□□ 1.03
PTCD3-204ENST00000418628 GCOM1H8Y6P7 765 aaPredicted RBP21.5■■□□□ 1.03
PTCD3-204ENST00000418628 POLR2MP0CAP2 368 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 SCG2P13521 617 aa21.5■■□□□ 1.03
PTCD3-204ENST00000418628 HOXA13P31271 388 aaPredicted RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms