RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PRR12Q9ULL5 1215 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 PCDHA5Q9Y5H7 936 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 MYO5AQ9Y4I1 1855 aaKnown RBP9.42□□□□□ -0.9
USP54-203ENST00000418501 MYH1P12882 1939 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 KIF2AO00139 706 aaPredicted RBP9.42□□□□□ -0.9
USP54-203ENST00000418501 FLOT1O75955 427 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 TUBB4AP04350 444 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 PNOCQ13519 176 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 LONRF3Q496Y0 759 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 MIGA2Q7L4E1 593 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 NLRX1Q86UT6 975 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 ENOX1Q8TC92 643 aaKnown RBP9.42□□□□□ -0.9
USP54-203ENST00000418501 NEK9Q8TD19 979 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 FAM196BA6NMK8 535 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 NFKBIEO00221 500 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 CYTH3O43739 400 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 ZFPM1Q8IX07 1006 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 RASGRP4Q8TDF6 673 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 MTMR8Q96EF0 704 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 PAGE5Q96GU1 130 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 FBXO40Q9UH90 709 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 LTBP1Q14766 1721 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 CFBP00751 764 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 UBASH3AP57075 661 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 KCNB1Q14721 858 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 GPR162Q16538 588 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 CCDC174Q6PII3 467 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 TXLNBQ8N3L3 684 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 CDHR1Q96JP9 859 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 PDLIM2Q96JY6 352 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 WDR18Q9BV38 432 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 GPRC5DQ9NZD1 345 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 DNM3Q9UQ16 869 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP54-203ENST00000418501 TBCAO75347 108 aaKnown RBP9.41□□□□□ -0.9
USP54-203ENST00000418501 SSBP05455 408 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP54-203ENST00000418501 MUTP22033 750 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 SFPQP23246 707 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP54-203ENST00000418501 PAK1Q13153 545 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 ZNF280CQ8ND82 737 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 GTF3C2Q8WUA4 911 aaPredicted RBP9.41□□□□□ -0.9
USP54-203ENST00000418501 SMIM22K7EJ46 135 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 OAZ1P54368 228 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 TRIM14Q14142 442 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 ZNF658Q5TYW1 1059 aaPredicted RBP9.41□□□□□ -0.9
USP54-203ENST00000418501 TTBK2Q6IQ55 1244 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 DHTKD1Q96HY7 919 aaPredicted RBP9.41□□□□□ -0.9
USP54-203ENST00000418501 WRNIP1Q96S55 665 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 RRAGDQ9NQL2 400 aaPredicted RBP9.41□□□□□ -0.9
USP54-203ENST00000418501 ZKSCAN5Q9Y2L8 839 aa9.41□□□□□ -0.9
USP54-203ENST00000418501 PVALEFA0A1B0GWK0 134 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 RPN1P04843 607 aaKnown RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 TECP42680 631 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 ARHGAP4P98171 946 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 NBPF9Q3BBW0 867 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 SPECC1Q5M775 1068 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 FKBP15Q5T1M5 1219 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 ANGEL2Q5VTE6 544 aaKnown RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 SPATA1Q5VX52 437 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 SH3BP5LQ7L8J4 393 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 ZBED3Q96IU2 234 aaPredicted RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 SYNRGQ9UMZ2 1314 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 PIK3CDO00329 1044 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 ZYXQ15942 572 aaKnown RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 PNMA8AQ86V59 439 aaPredicted RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 SPICE1Q8N0Z3 855 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 MB21D1Q8N884 522 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 ZC3H15Q8WU90 426 aaKnown RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 TEKT3Q9BXF9 490 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 MAN1B1Q9UKM7 699 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L15C9J2P7 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L13C9JLJ4 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L11C9JVI0 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L18D6R9N7 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L22D6RA61 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L17D6RBQ6 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L19D6RCP7 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L20D6RJB6 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 IPO7O95373 1038 aaKnown RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 ICAM1P05362 532 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 MAP3K9P80192 1104 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 RASSF7Q02833 373 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP17L24Q0WX57 530 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 USP50Q70EL3 339 aaPredicted RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 FCHSD1Q86WN1 690 aa9.4□□□□□ -0.9
USP54-203ENST00000418501 TTC12Q9H892 705 aaPredicted RBP9.4□□□□□ -0.9
USP54-203ENST00000418501 MYPNQ86TC9 1320 aa9.4□□□□□ -0.91
USP54-203ENST00000418501 MAP3K10Q02779 954 aa9.4□□□□□ -0.91
USP54-203ENST00000418501 PLA2G4DQ86XP0 818 aa9.4□□□□□ -0.91
USP54-203ENST00000418501 SLC17A8Q8NDX2 589 aa9.4□□□□□ -0.91
USP54-203ENST00000418501 LARP4BQ92615 738 aaKnown RBP9.4□□□□□ -0.91
USP54-203ENST00000418501 GNPTABQ3T906 1256 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 NT5DC1Q5TFE4 455 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 KLHL10Q6JEL2 608 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 EPSTI1Q96J88 318 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 TRIM47Q96LD4 638 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 RANBP17Q9H2T7 1088 aaKnown RBP9.39□□□□□ -0.91
USP54-203ENST00000418501 ZNHIT6Q9NWK9 470 aaKnown RBP9.39□□□□□ -0.91
USP54-203ENST00000418501 GOLGA6L9A6NEM1 432 aa9.39□□□□□ -0.91
USP54-203ENST00000418501 PES1O00541 588 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms