RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GRIN2CQ14957 1233 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 IQSEC1Q6DN90 963 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 ZNF365Q70YC5 407 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 MAFAQ8NHW3 353 aaPredicted RBP13.6□□□□□ -0.23
USP4-204ENST00000416417 ZMYM6O95789 1325 aa13.6□□□□□ -0.23
USP4-204ENST00000416417 B4E1Z4 1266 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 ZNF213O14771 459 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 B4GALT4O60513 344 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 KDM4AO75164 1064 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 PPIGQ13427 754 aaKnown RBP eCLIP13.59□□□□□ -0.231e-7■■■■■ 29.8
USP4-204ENST00000416417 SLC43A3Q8NBI5 491 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 MORC4Q8TE76 937 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 TBC1D5Q92609 795 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 COPS5Q92905 334 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 WDR11Q9BZH6 1224 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 IL25Q9H293 177 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 VTA1Q9NP79 307 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 DIAPH3Q9NSV4 1193 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.59□□□□□ -0.23
USP4-204ENST00000416417 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.59□□□□□ -0.23
USP4-204ENST00000416417 MYL3P08590 195 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 SNHG28P0DPA3 235 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 FOSL2P15408 326 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 RPS6P62753 249 aaKnown RBP13.59□□□□□ -0.23
USP4-204ENST00000416417 RNF207Q6ZRF8 634 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 TMEM199Q8N511 208 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 ESR2Q92731 530 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 COL25A1Q9BXS0 654 aaPredicted RBP13.59□□□□□ -0.23
USP4-204ENST00000416417 HIPK3Q9H422 1215 aa13.59□□□□□ -0.23
USP4-204ENST00000416417 CXXC1Q9P0U4 656 aaPredicted RBP13.59□□□□□ -0.23
USP4-204ENST00000416417 CDH23Q9H251 3354 aa13.58□□□□□ -0.24
USP4-204ENST00000416417 DUSP28Q4G0W2 176 aa13.58□□□□□ -0.24
USP4-204ENST00000416417 OR6J1Q8NGC5 347 aa13.58□□□□□ -0.24
USP4-204ENST00000416417 SCLYQ96I15 445 aa13.58□□□□□ -0.24
USP4-204ENST00000416417 TTC14Q96N46 770 aa13.58□□□□□ -0.24
USP4-204ENST00000416417 OSBPL3Q9H4L5 887 aa13.58□□□□□ -0.24
USP4-204ENST00000416417 RNF41Q9H4P4 317 aaPredicted RBP13.58□□□□□ -0.24
USP4-204ENST00000416417 ADD3Q9UEY8 706 aaKnown RBP13.58□□□□□ -0.24
USP4-204ENST00000416417 ZEB2O60315 1214 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 CABYRO75952 493 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 CYP2C9P11712 490 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 MFAP1P55081 439 aaKnown RBP13.57□□□□□ -0.24
USP4-204ENST00000416417 CHMP4BP1P59074 171 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 PDE4DQ08499 809 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 OTOP2Q7RTS6 562 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 PNMA1Q8ND90 353 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 TIFAQ96CG3 184 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 NOC4LQ9BVI4 516 aaKnown RBP13.57□□□□□ -0.24
USP4-204ENST00000416417 PBX4Q9BYU1 374 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 WNT8AQ9H1J5 351 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 ZNF576Q9H609 170 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 VAT1LQ9HCJ6 419 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 IL23AQ9NPF7 189 aa13.57□□□□□ -0.24
USP4-204ENST00000416417 TRMT13Q9NUP7 481 aaKnown RBP13.57□□□□□ -0.24
USP4-204ENST00000416417 PRUNE2Q8WUY3 3088 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 ARIH2O95376 493 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 PDE4AP27815 886 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 IRX6P78412 446 aaPredicted RBP13.56□□□□□ -0.24
USP4-204ENST00000416417 CDC37Q16543 378 aaPredicted RBP13.56□□□□□ -0.24
USP4-204ENST00000416417 RASIP1Q5U651 963 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 ADGRF4Q8IZF3 695 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 USP38Q8NB14 1042 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 ALDH8A1Q9H2A2 487 aaPredicted RBP13.56□□□□□ -0.24
USP4-204ENST00000416417 KAT14Q9H8E8 782 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 ZSWIM5Q9P217 1185 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 Q9Y3F1 56 aa13.56□□□□□ -0.24
USP4-204ENST00000416417 RBM47A0AV96 593 aaKnown RBP13.55□□□□□ -0.24
USP4-204ENST00000416417 FGBP02675 491 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 PCP11498 1178 aaKnown RBP13.55□□□□□ -0.24
USP4-204ENST00000416417 PURAQ00577 322 aaKnown RBP13.55□□□□□ -0.24
USP4-204ENST00000416417 FAM47CQ5HY64 1035 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 DGKHQ86XP1 1220 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 ENAHQ8N8S7 591 aaPredicted RBP13.55□□□□□ -0.24
USP4-204ENST00000416417 PPM1EQ8WY54 764 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 VWCEQ96DN2 955 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 TAAR1Q96RJ0 339 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 ZSCAN10Q96SZ4 725 aaPredicted RBP13.55□□□□□ -0.24
USP4-204ENST00000416417 PRDM12Q9H4Q4 367 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 COL20A1Q9P218 1284 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 TNKSO95271 1327 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 WDR19Q8NEZ3 1342 aa13.55□□□□□ -0.24
USP4-204ENST00000416417 DHX16O60231 1041 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 TXNP10599 105 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 EDNRBP24530 442 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 RABGGTBP53611 331 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 AAMPQ13685 434 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 PPP2R5BQ15173 497 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 QRICH1Q2TAL8 776 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 NBPF20Q3BBV1 942 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 GPATCH4Q5T3I0 446 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 PSRC1Q6PGN9 363 aaPredicted RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 IQCA1Q86XH1 822 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 TICAM2Q86XR7 235 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 STAG2Q8N3U4 1231 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 NKX2-4Q9H2Z4 354 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 PRDM6Q9NQX0 595 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 GSPT1P15170 499 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 MYOGP15173 224 aa13.54□□□□□ -0.24
USP4-204ENST00000416417 IMMTQ16891 758 aaKnown RBP13.54□□□□□ -0.24
USP4-204ENST00000416417 LY6KQ17RY6 165 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms