RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 AGRPO00253 132 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 DDX3YO15523 660 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 XPOTO43592 962 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 KRT37O76014 449 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 F11P03951 625 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 NBPF7P0C2Y1 421 aaPredicted RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 SRGAP2CP0DJJ0 459 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 SOX5P35711 763 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 EPHB1P54762 984 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 EZH2Q15910 746 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 LRFN4Q6PJG9 635 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 DDX46Q7L014 1031 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 BRAPQ7Z569 592 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 IFNL3Q8IZI9 196 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 TGFBRAP1Q8WUH2 860 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 NINJ1Q92982 152 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 JADE2Q9NQC1 790 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 SLC5A4Q9NY91 659 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 MARK1Q9P0L2 795 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 SFMBT1Q9UHJ3 866 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 EDARQ9UNE0 448 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 PCDHA9Q9Y5H5 950 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 SBF1O95248 1867 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 CPDO75976 1380 aa3.21□□□□□ -1.89
MCF2-204ENST00000414978 A6NNZ2 444 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 M0R2C6 588 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SMNDC1O75940 238 aaKnown RBP eCLIP3.21□□□□□ -1.9
MCF2-204ENST00000414978 IFIT2P09913 472 aaKnown RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 POU3F2P20265 443 aaPredicted RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 MAOBP27338 520 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 CTBSQ01459 385 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 STAT4Q14765 748 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ELMSAN1Q6PJG2 1045 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 NLRC3Q7RTR2 1065 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 CNTD1Q8N815 330 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ZNF513Q8N8E2 541 aaPredicted RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 ZBTB38Q8NAP3 1195 aaPredicted RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 BSNDQ8WZ55 320 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 KIF2CQ99661 725 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 CACNA2D2Q9NY47 1150 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 TOGARAM1Q9Y4F4 1720 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ABCC11Q96J66 1382 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ARFGEF2Q9Y6D5 1785 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SPATA31A1Q5TZJ5 1347 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 LINC01387J3KSC0 135 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 KCNK3O14649 394 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 KCNH1O95259 989 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ADAMTS2O95450 1211 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 GRK4P32298 578 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 DGKGP49619 791 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 IL2P60568 153 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SEPT7Q16181 437 aaKnown RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 SYT9Q86SS6 491 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 DGKHQ86XP1 1220 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SLC2A13Q96QE2 648 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 CORO1BQ9BR76 489 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 NUCKS1Q9H1E3 243 aaKnown RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.21□□□□□ -1.9
MCF2-204ENST00000414978 FNIP2Q9P278 1114 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SWAP70Q9UH65 585 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ZBTB21Q9ULJ3 1066 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 PTPN22Q9Y2R2 807 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SSH2Q76I76 1423 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 TIAM2Q8IVF5 1701 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 UBR3Q6ZT12 1888 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 NEMP1O14524 444 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 EPB41L2O43491 1005 aaKnown RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 ZNF500O60304 480 aaPredicted RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 APBA3O96018 575 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ITGAVP06756 1048 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ZSCAN20P17040 1043 aaPredicted RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 RGS19P49795 217 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 RPL6Q02878 288 aaKnown RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 POU5F1BQ06416 359 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 CFAP100Q494V2 611 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 DACT2Q5SW24 774 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 PIK3R6Q5UE93 754 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 PSAPL1Q6NUJ1 521 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 FAM13CQ8NE31 585 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 BTN2A2Q8WVV5 523 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 TMEM40Q8WWA1 233 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 NELL1Q92832 810 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 USP7Q93009 1102 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ATG4CQ96DT6 458 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 MS4A5Q9H3V2 200 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SLC52A2Q9HAB3 445 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 ARHGEF4Q9NR80 690 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 PLAAQ9Y263 795 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 COQ6Q9Y2Z9 468 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 SAMM50Q9Y512 469 aa3.21□□□□□ -1.9
MCF2-204ENST00000414978 RBBP6Q7Z6E9 1792 aaKnown RBP3.21□□□□□ -1.9
MCF2-204ENST00000414978 KIF4AO95239 1232 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 FOSP01100 380 aaPredicted RBP3.2□□□□□ -1.9
MCF2-204ENST00000414978 PYGMP11217 842 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 ECI1P42126 302 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 NEK2P51955 445 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SLC7A5Q01650 507 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 TRIM14Q14142 442 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SCARF1Q14162 830 aa3.2□□□□□ -1.9
MCF2-204ENST00000414978 SART3Q15020 963 aaKnown RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms