RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 CCDC12Q8WUD4 166 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-206ENST00000414829 CUL5Q93034 780 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 GLT8D2Q9H1C3 349 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 ABHD16BQ9H3Z7 469 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 GCOM1H8Y6P7 765 aaPredicted RBP16.89■□□□□ 0.29
LIMS1-206ENST00000414829 MYCP01106 439 aaPredicted RBP16.89■□□□□ 0.29
LIMS1-206ENST00000414829 POLR2MP0CAP2 368 aa16.89■□□□□ 0.29
LIMS1-206ENST00000414829 HSD17B4P51659 736 aa16.89■□□□□ 0.29
LIMS1-206ENST00000414829 SOX10P56693 466 aa16.89■□□□□ 0.29
LIMS1-206ENST00000414829 SLC35G1Q2M3R5 365 aa16.89■□□□□ 0.29
LIMS1-206ENST00000414829 ARMCX2Q7L311 632 aa16.89■□□□□ 0.29
LIMS1-206ENST00000414829 NSUN6Q8TEA1 469 aaKnown RBP16.89■□□□□ 0.29
LIMS1-206ENST00000414829 U2AF1L4Q8WU68 220 aaKnown RBP16.89■□□□□ 0.29
LIMS1-206ENST00000414829 DEFB118Q96PH6 123 aa16.89■□□□□ 0.29
LIMS1-206ENST00000414829 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.89■□□□□ 0.29
LIMS1-206ENST00000414829 DDX20Q9UHI6 824 aaKnown RBP16.89■□□□□ 0.29
LIMS1-206ENST00000414829 PPP1R11O60927 126 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-206ENST00000414829 SGPL1O95470 568 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 CFBP00751 764 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 AKR1A1P14550 325 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 IFNAR1P17181 557 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 CNGA1P29973 690 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 ALDH5A1P51649 535 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-206ENST00000414829 NEK4P51957 841 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 CNTN2Q02246 1040 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 TRIM32Q13049 653 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 HEATR3Q7Z4Q2 680 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 CCDC82Q8N4S0 544 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 ANKLE1Q8NAG6 615 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 PIBF1Q8WXW3 757 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 IWS1Q96ST2 819 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 RNF26Q9BY78 433 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-206ENST00000414829 SLKQ9H2G2 1235 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-206ENST00000414829 VTA1Q9NP79 307 aa16.88■□□□□ 0.29
LIMS1-206ENST00000414829 CAPN15O75808 1086 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 TAL1P17542 331 aaPredicted RBP16.87■□□□□ 0.29
LIMS1-206ENST00000414829 CDC27P30260 824 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 PDE4DQ08499 809 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 FUT2Q10981 343 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 RABEP1Q15276 862 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 FAM177A1Q8N128 213 aaPredicted RBP16.87■□□□□ 0.29
LIMS1-206ENST00000414829 SYTL5Q8TDW5 730 aaPredicted RBP16.87■□□□□ 0.29
LIMS1-206ENST00000414829 MORC4Q8TE76 937 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 FGD4Q96M96 766 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 CRISPLD2Q9H0B8 497 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 ZHX1Q9UKY1 873 aaPredicted RBP16.87■□□□□ 0.29
LIMS1-206ENST00000414829 FAM184BQ9ULE4 1060 aa16.87■□□□□ 0.29
LIMS1-206ENST00000414829 CENPFP49454 3210 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 SOWAHBA6NEL2 793 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 PIK3CDO00329 1044 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 ST18O60284 1047 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 TFRCP02786 760 aaKnown RBP16.86■□□□□ 0.29
LIMS1-206ENST00000414829 RARBP10826 455 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 CCND3P30281 292 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-206ENST00000414829 ADD1P35611 737 aaKnown RBP16.86■□□□□ 0.29
LIMS1-206ENST00000414829 AK2P54819 239 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 ACVR2BQ13705 512 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 ARHGEF16Q5VV41 709 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 MCTP2Q6DN12 878 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 CMTR1Q8N1G2 835 aaKnown RBP16.86■□□□□ 0.29
LIMS1-206ENST00000414829 CCDC148Q8NFR7 591 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 RMDN3Q96TC7 470 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 PSTPIP2Q9H939 334 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 EHMT1Q9H9B1 1298 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 FAM217BQ9NTX9 383 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-206ENST00000414829 BARHL2Q9NY43 387 aa16.86■□□□□ 0.29
LIMS1-206ENST00000414829 V9GY48 417 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-206ENST00000414829 POTEFA5A3E0 1075 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 PRPF3O43395 683 aaKnown RBP16.85■□□□□ 0.29
LIMS1-206ENST00000414829 SCG2P13521 617 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 EDNRBP24530 442 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 NAPAP54920 295 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 PFKFB3Q16875 520 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-206ENST00000414829 ARRDC4Q8NCT1 418 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 SMARCC2Q8TAQ2 1214 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 SPC25Q9HBM1 224 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 OGDHLQ9ULD0 1010 aa16.85■□□□□ 0.29
LIMS1-206ENST00000414829 DOCK3Q8IZD9 2030 aa16.84■□□□□ 0.29
LIMS1-206ENST00000414829 OPLAHO14841 1288 aa16.84■□□□□ 0.29
LIMS1-206ENST00000414829 PFKFB2O60825 505 aa16.84■□□□□ 0.29
LIMS1-206ENST00000414829 SNAI1O95863 264 aaPredicted RBP16.84■□□□□ 0.29
LIMS1-206ENST00000414829 ZNF865P0CJ78 1059 aaPredicted RBP16.84■□□□□ 0.29
LIMS1-206ENST00000414829 CCT2P78371 535 aaKnown RBP16.84■□□□□ 0.29
LIMS1-206ENST00000414829 SSRP1Q08945 709 aaKnown RBP16.84■□□□□ 0.29
LIMS1-206ENST00000414829 TBC1D32Q96NH3 1257 aa16.84■□□□□ 0.29
LIMS1-206ENST00000414829 PXMP2Q9NR77 195 aa16.84■□□□□ 0.29
LIMS1-206ENST00000414829 ESYT2A0FGR8 921 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 SPDYE3A6NKU9 549 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 STAM2O75886 525 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 FARP2O94887 1054 aaPredicted RBP16.83■□□□□ 0.28
LIMS1-206ENST00000414829 DEXIO95424 95 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 XBP1P17861 261 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 RGS19P49795 217 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 ADCY7P51828 1080 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 STXBP2Q15833 593 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 WWC2Q6AWC2 1192 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 XRRA1Q6P2D8 792 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 RBBP6Q7Z6E9 1792 aaKnown RBP16.83■□□□□ 0.28
LIMS1-206ENST00000414829 TRPV1Q8NER1 839 aa16.83■□□□□ 0.28
LIMS1-206ENST00000414829 BICD2Q8TD16 824 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms