RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 HOXA13P31271 388 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-202ENST00000414700 HERVK_113P62684 666 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 MUM1L1Q5H9M0 696 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 BTBD7Q9P203 1132 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 MYPNQ86TC9 1320 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 CEP350Q5VT06 3117 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 INF2Q27J81 1249 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 CTDP1Q9Y5B0 961 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-202ENST00000414700 PCDHB6Q9Y5E3 794 aa17.72■□□□□ 0.43
SHMT2-202ENST00000414700 PRPF40AO75400 957 aaKnown RBP17.71■□□□□ 0.43
SHMT2-202ENST00000414700 CFBP00751 764 aa17.71■□□□□ 0.43
SHMT2-202ENST00000414700 MRPL12P52815 198 aaKnown RBP17.71■□□□□ 0.43
SHMT2-202ENST00000414700 PLS1Q14651 629 aa17.71■□□□□ 0.43
SHMT2-202ENST00000414700 SNRNP48Q6IEG0 339 aaKnown RBP17.71■□□□□ 0.43
SHMT2-202ENST00000414700 LBX2Q6XYB7 198 aa17.71■□□□□ 0.43
SHMT2-202ENST00000414700 BICD2Q8TD16 824 aa17.71■□□□□ 0.43
SHMT2-202ENST00000414700 CLEC4DQ8WXI8 215 aa17.71■□□□□ 0.43
SHMT2-202ENST00000414700 TXNRD2Q9NNW7 524 aa17.71■□□□□ 0.43
SHMT2-202ENST00000414700 CCDC194A0A1B0GVG4 234 aa17.71■□□□□ 0.42
SHMT2-202ENST00000414700 FAM155AB1AL88 458 aaPredicted RBP17.71■□□□□ 0.42
SHMT2-202ENST00000414700 PDHXO00330 501 aa17.71■□□□□ 0.42
SHMT2-202ENST00000414700 FDX1P10109 184 aa17.71■□□□□ 0.42
SHMT2-202ENST00000414700 SF3A1Q15459 793 aaKnown RBP17.71■□□□□ 0.42
SHMT2-202ENST00000414700 TPRNQ4KMQ1 711 aa17.71■□□□□ 0.42
SHMT2-202ENST00000414700 LEO1Q8WVC0 666 aaPredicted RBP17.71■□□□□ 0.42
SHMT2-202ENST00000414700 ABCB11O95342 1321 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 SLC10A3P09131 477 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 FSTL1Q12841 308 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 RILPL1Q5EBL4 403 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 ANO1Q5XXA6 986 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 ZNF396Q96N95 335 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-202ENST00000414700 ZIC5Q96T25 663 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 PAGR1Q9BTK6 254 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 R3HDMLQ9H3Y0 253 aa17.7■□□□□ 0.42
SHMT2-202ENST00000414700 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.7■□□□□ 0.42
SHMT2-202ENST00000414700 MRPL11Q9Y3B7 192 aaKnown RBP17.7■□□□□ 0.42
SHMT2-202ENST00000414700 EDIL3O43854 480 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 GRM1Q13255 1194 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 TBCKQ8TEA7 893 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 SPATA32Q96LK8 384 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 TRERF1Q96PN7 1200 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 TEX13BQ9BXU2 312 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 LMBRD1Q9NUN5 540 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 POLR3EQ9NVU0 708 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 RTEL1Q9NZ71 1219 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 CFAP45Q9UL16 551 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 ZKSCAN5Q9Y2L8 839 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 RBBP6Q7Z6E9 1792 aaKnown RBP17.69■□□□□ 0.42
SHMT2-202ENST00000414700 ATP2A1O14983 1001 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 GADD45BO75293 160 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-202ENST00000414700 CNMDO75829 334 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 STAT3P40763 770 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 OAZ1P54368 228 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 KRT25Q7Z3Z0 450 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 LINC00301Q8NCQ3 95 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 RBPJLQ9UBG7 517 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 MRVI1Q9Y6F6 885 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 CENPFP49454 3210 aa17.69■□□□□ 0.42
SHMT2-202ENST00000414700 OSBPP22059 807 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 TRAF1Q13077 416 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 PABPC4Q13310 644 aaKnown RBP eCLIP17.68■□□□□ 0.428e-7■■■■■ 32.8
SHMT2-202ENST00000414700 NONOQ15233 471 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHMT2-202ENST00000414700 PTPAQ15257 358 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 ZSCAN23Q3MJ62 389 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 SASS6Q6UVJ0 657 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 FCHSD1Q86WN1 690 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 SCAND2PQ9GZW5 306 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-202ENST00000414700 RNF146Q9NTX7 359 aa17.68■□□□□ 0.42
SHMT2-202ENST00000414700 PIK3CDO00329 1044 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 IGF2BP3O00425 579 aaKnown RBP eCLIP17.67■□□□□ 0.42
SHMT2-202ENST00000414700 ZNF174Q15697 407 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 Q3C1V9 767 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 TTC38Q5R3I4 469 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 ATL3Q6DD88 541 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 CYP4F22Q6NT55 531 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 ANKRD23Q86SG2 305 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 COL20A1Q9P218 1284 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 RCOR1Q9UKL0 485 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 TESPA1A2RU30 521 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-202ENST00000414700 TMEM87AQ8NBN3 555 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 ANO3Q9BYT9 981 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 GLT8D2Q9H1C3 349 aa17.67■□□□□ 0.42
SHMT2-202ENST00000414700 GCOM1H8Y6P7 765 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-202ENST00000414700 POLR2MP0CAP2 368 aa17.66■□□□□ 0.42
SHMT2-202ENST00000414700 MARCKSP29966 332 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-202ENST00000414700 MCM7P33993 719 aa17.66■□□□□ 0.42
SHMT2-202ENST00000414700 LETM2Q2VYF4 491 aa17.66■□□□□ 0.42
SHMT2-202ENST00000414700 PAXIP1Q6ZW49 1069 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-202ENST00000414700 MB21D1Q8N884 522 aa17.66■□□□□ 0.42
SHMT2-202ENST00000414700 SMCR8Q8TEV9 937 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-202ENST00000414700 PURBQ96QR8 312 aaKnown RBP17.66■□□□□ 0.42
SHMT2-202ENST00000414700 SPATC1LQ9H0A9 340 aa17.66■□□□□ 0.42
SHMT2-202ENST00000414700 RBSNQ9H1K0 784 aa17.66■□□□□ 0.42
SHMT2-202ENST00000414700 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.66■□□□□ 0.42
SHMT2-202ENST00000414700 HSD17B4P51659 736 aa17.65■□□□□ 0.42
SHMT2-202ENST00000414700 RPS6P62753 249 aaKnown RBP17.65■□□□□ 0.42
SHMT2-202ENST00000414700 STK38Q15208 465 aa17.65■□□□□ 0.42
SHMT2-202ENST00000414700 NSMFQ6X4W1 530 aa17.65■□□□□ 0.42
SHMT2-202ENST00000414700 SLC30A10Q6XR72 485 aa17.65■□□□□ 0.42
SHMT2-202ENST00000414700 NEK8Q86SG6 692 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms