RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FMNL1O95466 1100 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 C4BPBP20851 252 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ATP5OP48047 213 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 GUCY2DQ02846 1103 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 FOXD4Q12950 439 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 NYXQ9GZU5 481 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 RHOBTB1O94844 696 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 TRIM71Q2Q1W2 868 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ASZ1Q8WWH4 475 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ZSCAN9O15535 394 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 BASP1P80723 227 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 CRLF3Q8IUI8 442 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 A0A087WUV0 522 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 PIK3AP1Q6ZUJ8 805 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 KLHL31Q9H511 634 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 BCL2L12Q9HB09 334 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 MMS19Q96T76 1030 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 ATP5J2-PTCD1G3V325 749 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 LDHBP07195 334 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 PTPREP23469 700 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 THOC5Q13769 683 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 NBPF9Q3BBW0 867 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 DPH5Q9H2P9 285 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 KCNJ18B7U540 433 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 HSPD1P10809 573 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 KCNJ12Q14500 433 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 C20orf194Q5TEA3 1177 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 MID2Q9UJV3 735 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 IMPDH2P12268 514 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 TCP1P17987 556 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 ST13P50502 369 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 UBE3AQ05086 875 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 LZTS2Q9BRK4 669 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 IVNS1ABPQ9Y6Y0 642 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 RNF113AO15541 343 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 GUCY1A3Q02108 690 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 RYBPQ8N488 228 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 MPP6Q9NZW5 540 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 LRMPQ12912 555 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 DMP1Q13316 513 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 HDAC1Q13547 482 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 AFAP1Q8N556 730 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 GDAP1Q8TB36 358 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 DHX38Q92620 1227 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 KIAA1107Q9UPP5 1409 aa14.44□□□□□ -0.1
CCDC88A-204ENST00000413716 BTN2A2Q8WVV5 523 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 KDM2BQ8NHM5 1336 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 RPN1P04843 607 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 PIK3CAP42336 1068 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 MORF4L2Q15014 288 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 PCGF5Q86SE9 256 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 RHPN1Q8TCX5 695 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 MDM2Q00987 491 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 NT5C3AQ9H0P0 336 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 AARS2Q5JTZ9 985 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 CADPS2Q86UW7 1296 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 NCAPG2Q86XI2 1143 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 AHI1Q8N157 1196 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 METTL13Q8N6R0 699 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 TUBGCP3Q96CW5 907 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 DONSONQ9NYP3 566 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 GOLGA4Q13439 2230 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 ESRRBO95718 433 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 MMEP08473 750 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 ATXN8OSP0DMR3 200 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 TAC1P20366 129 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 CBX8Q9HC52 389 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 NFE2L3Q9Y4A8 694 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 C9orf84Q5VXU9 1444 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 CCDC142Q17RM4 750 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 ADAT2Q7Z6V5 191 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 APLFQ8IW19 511 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 TMEM245Q9H330 911 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 LZTS1Q9Y250 596 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 DDX39AO00148 427 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 MYCLP12524 364 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 IL15P40933 162 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 DNAAF3Q8N9W5 541 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 TMEM60Q9H2L4 133 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 GPCPD1Q9NPB8 672 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 TBC1D23Q9NUY8 699 aa14.43□□□□□ -0.1
CCDC88A-204ENST00000413716 EPHB4P54760 987 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 RARS2Q5T160 578 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 MIGA1Q8NAN2 632 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 ST13P5Q8NFI4 369 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 NCOA2Q15596 1464 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 PLD3Q8IV08 490 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 UBXN8O00124 270 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 GYG2O15488 501 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 PJA2O43164 708 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 ECM2O94769 699 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 HESX1Q9UBX0 185 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 BUB1O43683 1085 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 RXRAP19793 462 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 PDE1AP54750 535 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 DEFA1P59665 94 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 DEFA3P59666 94 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 MCTP2Q6DN12 878 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms