RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TRERF1Q96PN7 1200 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 SAGE1Q9NXZ1 904 aa15.37■□□□□ 0.05
LIMS1-204ENST00000409441 SLC25A27O95847 323 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 NCAPG2Q86XI2 1143 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 CCAR1Q8IX12 1150 aaKnown RBP15.36■□□□□ 0.05
LIMS1-204ENST00000409441 PDLIM2Q96JY6 352 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 ALG1Q9BT22 464 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 HOMER2Q9NSB8 354 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 BARHL2Q9NY43 387 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 ABCB11O95342 1321 aa15.36■□□□□ 0.05
LIMS1-204ENST00000409441 STXBP3O00186 592 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 ERCC3P19447 782 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 TKFCQ3LXA3 575 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 HS1BP3Q53T59 392 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 CHRDL2Q6WN34 429 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 ZNF396Q96N95 335 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-204ENST00000409441 PORCNQ9H237 461 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 MROH8Q9H579 483 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 MRPL11Q9Y3B7 192 aaKnown RBP15.35■□□□□ 0.05
LIMS1-204ENST00000409441 PARP14Q460N5 1801 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 THSD7BQ9C0I4 1608 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 GOLGA6L4A6NEF3 574 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 hCG_1984214I3L0E3 225 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 NAPAP54920 295 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 TYW1BQ6NUM6 668 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 FAM173BQ6P4H8 233 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 ZNF713Q8N859 430 aaPredicted RBP15.35■□□□□ 0.05
LIMS1-204ENST00000409441 JMYQ8N9B5 988 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 SHCBP1Q8NEM2 672 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 CHST13Q8NET6 341 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 CLEC4DQ8WXI8 215 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 EFCC1Q9HA90 598 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 SH3GLB2Q9NR46 395 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 GJB4Q9NTQ9 266 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 RNF146Q9NTX7 359 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 VPS54Q9P1Q0 977 aa15.35■□□□□ 0.05
LIMS1-204ENST00000409441 COPB2P35606 906 aa15.34■□□□□ 0.05
LIMS1-204ENST00000409441 MUM1L1Q5H9M0 696 aa15.34■□□□□ 0.05
LIMS1-204ENST00000409441 WDR78Q5VTH9 848 aa15.34■□□□□ 0.05
LIMS1-204ENST00000409441 RTN4Q9NQC3 1192 aaKnown RBP15.34■□□□□ 0.05
LIMS1-204ENST00000409441 DDX19AQ9NUU7 478 aaKnown RBP15.34■□□□□ 0.05
LIMS1-204ENST00000409441 SMCO2A6NFE2 343 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 GPR25O00155 361 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 ECM2O94769 699 aaPredicted RBP15.33■□□□□ 0.04
LIMS1-204ENST00000409441 XBP1P17861 261 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 SP3Q02447 781 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 CCDC12Q8WUD4 166 aaPredicted RBP15.33■□□□□ 0.04
LIMS1-204ENST00000409441 TBC1D5Q92609 795 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 SHISA4Q96DD7 197 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 FUCA2Q9BTY2 467 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 ACAD9Q9H845 621 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 PSTPIP2Q9H939 334 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 TFIP11Q9UBB9 837 aaKnown RBP15.33■□□□□ 0.04
LIMS1-204ENST00000409441 FBXO40Q9UH90 709 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 TSKSQ9UJT2 592 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 CEP350Q5VT06 3117 aa15.33■□□□□ 0.04
LIMS1-204ENST00000409441 NFIBO00712 420 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 OPLAHO14841 1288 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 MAPK4P31152 587 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 FOSBP53539 338 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 NLRP5P59047 1200 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 PPP1R18Q6NYC8 613 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 MCF2L2Q86YR7 1114 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 C8orf76Q96K31 380 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 RRAGDQ9NQL2 400 aaPredicted RBP15.32■□□□□ 0.04
LIMS1-204ENST00000409441 RCOR1Q9UKL0 485 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 KCNJ14Q9UNX9 436 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 A0A0G2JMZ2 1700 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 ESPNB1AK53 854 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 MRPL12P52815 198 aaKnown RBP15.32■□□□□ 0.04
LIMS1-204ENST00000409441 LACTBP83111 547 aaPredicted RBP15.32■□□□□ 0.04
LIMS1-204ENST00000409441 TRIM29Q14134 588 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 NOM1Q5C9Z4 860 aaKnown RBP15.32■□□□□ 0.04
LIMS1-204ENST00000409441 ANKRD35Q8N283 1001 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 CCDC148Q8NFR7 591 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 ZMYND12Q9H0C1 365 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 NUP62CLQ9H1M0 184 aa15.32■□□□□ 0.04
LIMS1-204ENST00000409441 COL11A1P12107 1806 aaPredicted RBP15.32■□□□□ 0.04
LIMS1-204ENST00000409441 STRNO43815 780 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 CFBP00751 764 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 FCER1AP12319 257 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 GNA11P29992 359 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 KRT40Q6A162 431 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 NSMFQ6X4W1 530 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 GPR142Q7Z601 462 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 PLEKHH3Q7Z736 793 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 FAM177A1Q8N128 213 aaPredicted RBP15.31■□□□□ 0.04
LIMS1-204ENST00000409441 FBXO18Q8NFZ0 1043 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 PHF20Q9BVI0 1012 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 C6orf50Q9HD87 102 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 RIC8AQ9NPQ8 531 aa15.31■□□□□ 0.04
LIMS1-204ENST00000409441 ESYT2A0FGR8 921 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 GCOM1H8Y6P7 765 aaPredicted RBP15.3■□□□□ 0.04
LIMS1-204ENST00000409441 FKTNO75072 461 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 POLR2MP0CAP2 368 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 CCDC192P0DO97 292 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 LIG1P18858 919 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 CTGFP29279 349 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 CLCN1P35523 988 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 PSMC4P43686 418 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms