RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 MICALL1Q8N3F8 863 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 CCDC84Q86UT8 332 aaPredicted RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 ATP6V0A1Q93050 837 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 NLRP4Q96MN2 994 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 FAM49AQ9H0Q0 323 aaPredicted RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 GRAPQ13588 217 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 GRAPLQ8TC17 118 aaPredicted RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 CCDC17Q96LX7 622 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 SNX25Q9H3E2 840 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 ASPRV1Q53RT3 343 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 METTL23Q86XA0 190 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 IFT20Q8IY31 132 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 C7orf31Q8N865 590 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 ZNF131P52739 623 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 ABCF3Q9NUQ8 709 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 NOC2LQ9Y3T9 749 aaKnown RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 THAP12O43422 761 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 HHATQ5VTY9 493 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 BRINP3Q76B58 766 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 PALM2Q8IXS6 379 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 SLITRK6Q9H5Y7 841 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 CIB2O75838 187 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 GSPT1P15170 499 aaKnown RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 MCTP2Q6DN12 878 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 GBP6Q6ZN66 633 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 H0YCG3 227 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 MYL7Q01449 175 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 GPATCH4Q5T3I0 446 aaKnown RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 GDAP1L1Q96MZ0 367 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 KANSL2Q9H9L4 492 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 SOS2Q07890 1332 aaPredicted RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 EIF2AK2P19525 551 aaKnown RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 TTC30BQ8N4P2 665 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 PI4KBQ9UBF8 816 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 CFAP57Q96MR6 1250 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 PCDHA4Q9UN74 947 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 I3L4J1 428 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 HDXQ7Z353 690 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 NBPF11Q86T75 865 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 ANKARQ7Z5J8 1434 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 CLIC2O15247 247 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 TBCKQ8TEA7 893 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 ZCCHC11Q5TAX3 1644 aaKnown RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 RPN1P04843 607 aaKnown RBP12.44□□□□□ -0.42
TTC28-201ENST00000397906 NXNQ6DKJ4 435 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 STMN2Q93045 179 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 CHMP6Q96FZ7 201 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 HECW2Q9P2P5 1572 aa12.44□□□□□ -0.42
TTC28-201ENST00000397906 ECE2O60344 883 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 DDIT3P35638 169 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 ADCY8P40145 1251 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 KCNK3O14649 394 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 ADALQ6DHV7 355 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 GOLGA5Q8TBA6 731 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 SCRN1Q12765 414 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 WRNIP1Q96S55 665 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 ABCC4O15439 1325 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 USP6P35125 1406 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 CFAP221Q4G0U5 840 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 SPDYE2BA6NHP3 402 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 SPDYE6P0CI01 402 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 ZHX2Q9Y6X8 837 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 TMTC1Q8IUR5 882 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 RPUSD2Q8IZ73 545 aaKnown RBP12.43□□□□□ -0.42
TTC28-201ENST00000397906 PUS7LQ9H0K6 701 aaKnown RBP12.43□□□□□ -0.42
TTC28-201ENST00000397906 BZW2Q9Y6E2 419 aaKnown RBP12.43□□□□□ -0.42
TTC28-201ENST00000397906 ADGRL2O95490 1459 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 ZNF75DP51815 510 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 SCARA5Q6ZMJ2 495 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 ZNF589Q86UQ0 364 aaPredicted RBP12.43□□□□□ -0.42
TTC28-201ENST00000397906 N4BP1O75113 896 aaKnown RBP12.43□□□□□ -0.42
TTC28-201ENST00000397906 LRRC41Q15345 812 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 PHLDB2Q86SQ0 1253 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 PTPN22Q9Y2R2 807 aa12.43□□□□□ -0.42
TTC28-201ENST00000397906 BUB1BO60566 1050 aaPredicted RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 CIAO1O76071 339 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 CDC37Q16543 378 aaPredicted RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 ERCC6LQ2NKX8 1250 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 RILPQ96NA2 401 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 SMYD2Q9NRG4 433 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 FAM196BA6NMK8 535 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 NFX1Q12986 1120 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 HLFQ16534 295 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 SCYL1Q96KG9 808 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 NXF1Q9UBU9 619 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 RIPOR2Q9Y4F9 1068 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 MAD1L1Q9Y6D9 718 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 TTC37Q6PGP7 1564 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 PFKFB2O60825 505 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 NOL3O60936 208 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 SKIV2LQ15477 1246 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 GANCQ8TET4 914 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 ATP2A3Q93084 1043 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 PNMA2Q9UL42 364 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 TUBB4AP04350 444 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 PDIA3P30101 505 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 TMCO4Q5TGY1 634 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 HEG1Q9ULI3 1381 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 UBE3CQ15386 1083 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 PTPREP23469 700 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms