RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 POTEMA6NI47 508 aa15.02■□□□□ -0
CCDC3-202ENST00000378839 USP17L10C9JJH3 530 aa15.02■□□□□ -0
CCDC3-202ENST00000378839 ARHGAP25P42331 645 aa15.02■□□□□ -0
CCDC3-202ENST00000378839 ZNF771Q7L3S4 317 aaPredicted RBP15.02■□□□□ -0
CCDC3-202ENST00000378839 MB21D1Q8N884 522 aa15.02■□□□□ -0
CCDC3-202ENST00000378839 CCDC12Q8WUD4 166 aaPredicted RBP15.02■□□□□ -0
CCDC3-202ENST00000378839 TTLL1O95922 423 aa15.02□□□□□ -0.01
CCDC3-202ENST00000378839 CLCN6P51797 869 aa15.02□□□□□ -0.01
CCDC3-202ENST00000378839 MSL1Q68DK7 614 aa15.02□□□□□ -0.01
CCDC3-202ENST00000378839 FEZ1Q99689 392 aa15.02□□□□□ -0.01
CCDC3-202ENST00000378839 TFR2Q9UP52 801 aa15.02□□□□□ -0.01
CCDC3-202ENST00000378839 MYMKA6NI61 221 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 CLK2P49760 499 aaKnown RBP15.01□□□□□ -0.01
CCDC3-202ENST00000378839 PDE4CQ08493 712 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 ASPRV1Q53RT3 343 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 SH3BP5LQ7L8J4 393 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 CNGA4Q8IV77 575 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 TRERF1Q96PN7 1200 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 NAA15Q9BXJ9 866 aaKnown RBP15.01□□□□□ -0.01
CCDC3-202ENST00000378839 SEMA6BQ9H3T3 888 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 OGFRQ9NZT2 677 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 B4DLN1 442 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 ADCY7P51828 1080 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 DMTNQ08495 405 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 PDE4DQ08499 809 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 MCM6Q14566 821 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 WDR59Q6PJI9 974 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 GLIS3Q8NEA6 775 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 NUP88Q99567 741 aaPredicted RBP15.01□□□□□ -0.01
CCDC3-202ENST00000378839 DDTLA6NHG4 134 aaPredicted RBP15.01□□□□□ -0.01
CCDC3-202ENST00000378839 LGALS16A8MUM7 142 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 NPR1P16066 1061 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 KRT9P35527 623 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 SIAH1Q8IUQ4 282 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 HAS1Q92839 578 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 TRIM10Q9UDY6 481 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 SUGT1Q9Y2Z0 365 aa15.01□□□□□ -0.01
CCDC3-202ENST00000378839 ASIC1P78348 528 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 TCP10Q12799 353 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 CALCRLQ16602 461 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 TRIM47Q96LD4 638 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 THAP9Q9H5L6 903 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 SCN9AQ15858 1988 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 GOLGA6L9A6NEM1 432 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 MYL1P05976 194 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 MMP10P09238 476 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 ATP2B2Q01814 1243 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 SPAG1Q07617 926 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 MIIPQ5JXC2 388 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 TMC4Q7Z404 712 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 P2RX7Q99572 595 aaKnown RBP15□□□□□ -0.01
CCDC3-202ENST00000378839 SLC39A2Q9NP94 309 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 ST7Q9NRC1 585 aa15□□□□□ -0.01
CCDC3-202ENST00000378839 PNMA6FA0A0J9YX94 578 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 MPHOSPH10O00566 681 aaKnown RBP14.99□□□□□ -0.01
CCDC3-202ENST00000378839 CRKP46108 304 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 P2RX5Q93086 422 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 SLF1Q9BQI6 1058 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 RIC8AQ9NPQ8 531 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 AGPAT5Q9NUQ2 364 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 FAM198AQ9UFP1 575 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 TAL1P17542 331 aaPredicted RBP14.99□□□□□ -0.01
CCDC3-202ENST00000378839 FXR2P51116 673 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC3-202ENST00000378839 JAG1P78504 1218 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 HHIPL2Q6UWX4 724 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 RSRC2Q7L4I2 434 aaKnown RBP14.99□□□□□ -0.01
CCDC3-202ENST00000378839 KIAA0825Q8IV33 1275 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 CSGALNACT2Q8N6G5 542 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 MTMR8Q96EF0 704 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 CCDC51Q96ER9 411 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 TTYH3Q9C0H2 523 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 CUEDC2Q9H467 287 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 FHOD1Q9Y613 1164 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 ZNF646O15015 1829 aaPredicted RBP14.99□□□□□ -0.01
CCDC3-202ENST00000378839 TNNI2P48788 182 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 PPP2R3AQ06190 1150 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 DYMQ7RTS9 669 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 DHTKD1Q96HY7 919 aaPredicted RBP14.99□□□□□ -0.01
CCDC3-202ENST00000378839 LRWD1Q9UFC0 647 aa14.99□□□□□ -0.01
CCDC3-202ENST00000378839 EFCAB8A8MWE9 144 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 PSMA7O14818 248 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 EEF1GP26641 437 aaKnown RBP14.98□□□□□ -0.01
CCDC3-202ENST00000378839 TEKT1Q969V4 418 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 MYH4Q9Y623 1939 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 SEC31AO94979 1220 aaKnown RBP14.98□□□□□ -0.01
CCDC3-202ENST00000378839 CCNE1P24864 410 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 SNAP25P60880 206 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 TMTC1Q8IUR5 882 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 NLGN1Q8N2Q7 840 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 UBXN4Q92575 508 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 TUBGCP2Q9BSJ2 902 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 EXOC1Q9NV70 894 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 ZNF219Q9P2Y4 722 aaPredicted RBP14.98□□□□□ -0.01
CCDC3-202ENST00000378839 SWAP70Q9UH65 585 aa14.98□□□□□ -0.01
CCDC3-202ENST00000378839 ZNF569Q5MCW4 686 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 SLC35F6Q8N357 371 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 MNS1Q8NEH6 495 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 DNAJC7Q99615 494 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 MYH7BA7E2Y1 1941 aa14.97□□□□□ -0.01
CCDC3-202ENST00000378839 USP17L15C9J2P7 530 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms