RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TRIM11Q96F44 468 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 ASPSCR1Q9BZE9 553 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 SNX25Q9H3E2 840 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 PIGUQ9H490 435 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 TRIM45Q9H8W5 580 aaPredicted RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 ARHGEF3Q9NR81 526 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 HSPA13P48723 471 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 RUBCNQ92622 972 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 TSR2Q969E8 191 aaKnown RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 LRRC39Q96DD0 335 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 TRIM39Q9HCM9 518 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 ECHDC1Q9NTX5 307 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 IFNAR2P48551 515 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 FCHO2Q0JRZ9 810 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 SRLQ86TD4 932 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 ZFYVE19Q96K21 471 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 USP26Q9BXU7 913 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.46□□□□□ -0.89
LIG3-202ENST00000378526 PRR23AA6NEV1 266 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 PRPF6O94906 941 aaKnown RBP9.46□□□□□ -0.89
LIG3-202ENST00000378526 BAG3O95817 575 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 OLR1P78380 273 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 ADAM21Q9UKJ8 722 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 EXOC7Q9UPT5 735 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 HSPA6P17066 643 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 IL12RB1P42701 662 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 YWHAEP62258 255 aaKnown RBP9.46□□□□□ -0.89
LIG3-202ENST00000378526 VPS16Q9H269 839 aa9.46□□□□□ -0.89
LIG3-202ENST00000378526 RNF103-CHMP3A0A140T963 221 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 ASNA1O43681 348 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 CDH2P19022 906 aaPredicted RBP9.46□□□□□ -0.9
LIG3-202ENST00000378526 ARMC3Q5W041 872 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 ZGPATQ8N5A5 531 aaKnown RBP9.46□□□□□ -0.9
LIG3-202ENST00000378526 MAML1Q92585 1016 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 ESR2Q92731 530 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 L3MBTL1Q9Y468 752 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 AXIN1O15169 862 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 CHEK2O96017 543 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 PNMA6AP0CW24 399 aaPredicted RBP9.46□□□□□ -0.9
LIG3-202ENST00000378526 MTX1Q13505 466 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 RGS9BPQ6ZS82 235 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 RAB20Q9NX57 234 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 ATP6V1HQ9UI12 483 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 ZFP69BQ9UJL9 534 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 RAD54L2Q9Y4B4 1467 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 M0R3G1 203 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 XRCC5P13010 732 aaKnown RBP9.46□□□□□ -0.9
LIG3-202ENST00000378526 FOSL2P15408 326 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 SCRN3Q0VDG4 424 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 C10orf76Q5T2E6 689 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 BTNL9Q6UXG8 535 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 CADPS2Q86UW7 1296 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 CDAN1Q8IWY9 1227 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 RPS6KC1Q96S38 1066 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 PRPF18Q99633 342 aaKnown RBP9.46□□□□□ -0.9
LIG3-202ENST00000378526 PITPNM3Q9BZ71 974 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 LSG1Q9H089 658 aaKnown RBP9.46□□□□□ -0.9
LIG3-202ENST00000378526 GOLGA8TH3BQL2 631 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 GOLGA8HP0CJ92 632 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 CASP14P31944 242 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 AARSP49588 968 aaKnown RBP eCLIP9.46□□□□□ -0.9
LIG3-202ENST00000378526 HIF1AQ16665 826 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 OTULINQ96BN8 352 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 FMO2Q99518 471 aa9.46□□□□□ -0.9
LIG3-202ENST00000378526 DLGAP3O95886 979 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 MYCNP04198 464 aaPredicted RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 MKRN3Q13064 507 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 IQCB1Q15051 598 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 CRNKL1Q9BZJ0 848 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 NFKBIL1Q9UBC1 381 aaPredicted RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 TMA7Q9Y2S6 64 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 CUX2O14529 1486 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 NCF2P19878 526 aaPredicted RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 ARMCX4Q5H9R4 360 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 KANK4Q5T7N3 995 aaPredicted RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 RAPH1Q70E73 1250 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 TRIM69Q86WT6 500 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 RAPGEF5Q92565 580 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 FAM167BQ9BTA0 163 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 KLF18A0A0U1RQI7 1052 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 SRGAP2BP0DMP2 458 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 EIF2B2P49770 351 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 TP53BP2Q13625 1128 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 MORF4L2Q15014 288 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 TMEM154Q6P9G4 183 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 THOC1Q96FV9 657 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 TBC1D4O60343 1298 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 IL10P22301 178 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 PRPSAP1Q14558 356 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 NFE2L2Q16236 605 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 SYCP2LQ5T4T6 812 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 CENPUQ71F23 418 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIG3-202ENST00000378526 SEPT1Q8WYJ6 367 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 RSPH1Q8WYR4 309 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 APOBEC2Q9Y235 224 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 IQANK1A0A1B0GTG1 560 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 TARSL2A2RTX5 802 aaKnown RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 SPDYE3A6NKU9 549 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 RSPH10B2B2RC85 870 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms