RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 GSDMDP57764 484 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 MAP3K9P80192 1104 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 CCDC144BQ3MJ40 725 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 KRT25Q7Z3Z0 450 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 FAM160B2Q86V87 743 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 REXO1Q8N1G1 1221 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 KIFC2Q96AC6 838 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 TMEM260Q9NX78 707 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 PLA2G6O60733 806 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 MRPL12P52815 198 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 SAMD1Q6SPF0 538 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 ANKRD7Q92527 254 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 BPIFA3Q9BQP9 254 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 AMNQ9BXJ7 453 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 NMRK2Q9NPI5 230 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 FEM1BQ9UK73 627 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 AFG3L2Q9Y4W6 797 aa14.91□□□□□ -0.02
SQSTM1-201ENST00000360718 RLFQ13129 1914 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 WDR46O15213 610 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 MARCKSP29966 332 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 HMGCS2P54868 508 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 USH1GQ495M9 461 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 TTC38Q5R3I4 469 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 FBXO11Q86XK2 927 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 CCDC112Q8NEF3 446 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 CUL5Q93034 780 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 KIAA1468Q9P260 1216 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 IMPACTQ9P2X3 320 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 BIN2Q9UBW5 565 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 PCDHA1Q9Y5I3 950 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 MYH7BA7E2Y1 1941 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 AOPEPQ8N6M6 819 aa14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 ZNF526Q8TF50 670 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-201ENST00000360718 A0A1B0GVL5 298 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 SKILP12757 684 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 NONOQ15233 471 aaKnown RBP eCLIP14.89□□□□□ -0.035e-8■□□□□ 8.7
SQSTM1-201ENST00000360718 UBE2SQ16763 222 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 KRI1Q8N9T8 703 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 RANBP17Q9H2T7 1088 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 ELP3Q9H9T3 547 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 RIC8AQ9NPQ8 531 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 OPLAHO14841 1288 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 CUTAO60888 179 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 IREB2P48200 963 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 NDUFA8P51970 172 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 AXDND1Q5T1B0 1012 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 JAKMIP3Q5VZ66 844 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 CEP135Q66GS9 1140 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 CCDC174Q6PII3 467 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 RPAP3Q9H6T3 665 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 PSTPIP2Q9H939 334 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 CSADQ9Y600 493 aa14.89□□□□□ -0.03
SQSTM1-201ENST00000360718 DCAF8L1A6NGE4 600 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 NRDCO43847 1150 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 GRIN1Q05586 938 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 PTPN14Q15678 1187 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 ZNF174Q15697 407 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 INF2Q27J81 1249 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 WNK4Q96J92 1243 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 P2RX7Q99572 595 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 TANGO6Q9C0B7 1094 aa14.88□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L15C9J2P7 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 C19orf81C9J6K1 198 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L13C9JLJ4 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L11C9JVI0 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L18D6R9N7 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L22D6RA61 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L17D6RBQ6 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L19D6RCP7 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L20D6RJB6 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 KIF2AO00139 706 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 EDIL3O43854 480 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 CMA1P23946 247 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 CLK2P49760 499 aaKnown RBP14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L24Q0WX57 530 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 TTLL12Q14166 644 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 USP17L6PQ6QN14 398 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 FILIP1Q7Z7B0 1213 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 C12orf42Q96LP6 360 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 CLIC6Q96NY7 704 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 ARID3AQ99856 593 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 KCND1Q9NSA2 647 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 MORC2Q9Y6X9 1032 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 ZNF536O15090 1300 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 ZNF202O95125 648 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 NLRP12P59046 1061 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 TIGD1Q96MW7 591 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 SLF1Q9BQI6 1058 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 ZNF408Q9H9D4 720 aa14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 COL11A1P12107 1806 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-201ENST00000360718 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 IRF6O14896 467 aa14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 MCM7P33993 719 aa14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 MCTP2Q6DN12 878 aa14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 ANKRD13AQ8IZ07 590 aa14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 PRPF38AQ8NAV1 312 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 FERMT2Q96AC1 680 aa14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 MEIS2O14770 477 aa14.86□□□□□ -0.03
SQSTM1-201ENST00000360718 FLOT1O75955 427 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms