RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CERS5Q8N5B7 392 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 DNAAF4Q8WXU2 420 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 COL26A1Q96A83 441 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 MYD88Q99836 296 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 MKNK1Q9BUB5 465 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 VEZTQ9HBM0 779 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 ZFP64Q9NPA5 681 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 CWC25Q9NXE8 425 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-201ENST00000355766 TNNQ9UQP3 1299 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 LEMD3Q9Y2U8 911 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 PCDHAC2Q9Y5I4 1007 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 AOX1Q06278 1338 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 WDHD1O75717 1129 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-201ENST00000355766 FARP2O94887 1054 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-201ENST00000355766 GHRHP01286 108 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 GNAI2P04899 355 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 GJB1P08034 283 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 VGLL4Q14135 290 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 RASA3Q14644 834 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 CFAP100Q494V2 611 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 KSR2Q6VAB6 950 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-201ENST00000355766 IL22RA1Q8N6P7 574 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 ANKRD44Q8N8A2 993 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 LINS1Q8NG48 757 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 MEGF10Q96KG7 1140 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 SRCIN1Q9C0H9 1055 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 ZCCHC17Q9NP64 241 aaKnown RBP8.52□□□□□ -1.05
VPS13A-201ENST00000355766 CXXC1Q9P0U4 656 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-201ENST00000355766 STXBP5LQ9Y2K9 1186 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 UTYO14607 1347 aa8.52□□□□□ -1.05
VPS13A-201ENST00000355766 EIF5BO60841 1220 aaKnown RBP8.51□□□□□ -1.05
VPS13A-201ENST00000355766 ATG7O95352 703 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 IGHDP01880 384 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 CCL5P13501 91 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 GRK4P32298 578 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 MTX1Q13505 466 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 TNFAIP1Q13829 316 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 NAA30Q147X3 362 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-201ENST00000355766 G2E3Q7L622 706 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 TTLL11Q8NHH1 800 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS13A-201ENST00000355766 JARID2Q92833 1246 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-201ENST00000355766 GREM2Q9H772 168 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 CD209Q9NNX6 404 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 SRRDQ9UH36 339 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 SPEF2Q9C093 1822 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 UNC80Q8N2C7 3258 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 IRS2Q9Y4H2 1338 aa8.51□□□□□ -1.05
VPS13A-201ENST00000355766 F8W031 263 aaPredicted RBP8.5□□□□□ -1.05
VPS13A-201ENST00000355766 CETPP11597 493 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 CTGFP29279 349 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 IGHMBP2P38935 993 aaKnown RBP8.5□□□□□ -1.05
VPS13A-201ENST00000355766 FKBP1AP62942 108 aaKnown RBP8.5□□□□□ -1.05
VPS13A-201ENST00000355766 NUCB1Q02818 461 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 NEXNQ0ZGT2 675 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 BEND3Q5T5X7 828 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 TMEM164Q5U3C3 297 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 CEP85Q6P2H3 762 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 DEFB123Q8N688 67 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 RAET1EQ8TD07 263 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 U2AF1L4Q8WU68 220 aaKnown RBP8.5□□□□□ -1.05
VPS13A-201ENST00000355766 PIK3R5Q8WYR1 880 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 PRMT6Q96LA8 375 aaPredicted RBP8.5□□□□□ -1.05
VPS13A-201ENST00000355766 ANKRD2Q9GZV1 360 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 RNF208Q9H0X6 261 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 RBSNQ9H1K0 784 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 DCTPP1Q9H773 170 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 PHAXQ9H814 394 aaKnown RBP8.5□□□□□ -1.05
VPS13A-201ENST00000355766 TRIM33Q9UPN9 1127 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 RIPOR2Q9Y4F9 1068 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 CSADQ9Y600 493 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 MYPNQ86TC9 1320 aa8.5□□□□□ -1.05
VPS13A-201ENST00000355766 ARAP2Q8WZ64 1704 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 PI4KAP2A4QPH2 592 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 BTBD19C9JJ37 291 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 ALX3O95076 343 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 UBTFL1P0CB47 393 aaPredicted RBP8.49□□□□□ -1.05
VPS13A-201ENST00000355766 UBXN2AP68543 259 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 Q7L0L9 218 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 PI4KAP1Q8N8J0 262 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 TEPSINQ96N21 525 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 PSMG3-AS1Q96PY0 264 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 METTL22Q9BUU2 404 aaPredicted RBP8.49□□□□□ -1.05
VPS13A-201ENST00000355766 STAP2Q9UGK3 403 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 SNCAIPQ9Y6H5 919 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 ADGRA2Q96PE1 1338 aa8.49□□□□□ -1.05
VPS13A-201ENST00000355766 SPTBN5Q9NRC6 3674 aaKnown RBP8.48□□□□□ -1.05
VPS13A-201ENST00000355766 ZBTB39O15060 712 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 IL1R1P14778 569 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 HOXD10P28358 340 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 BMP8BP34820 402 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 PSMC4P43686 418 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 KCNJ4P48050 445 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 RBM5P52756 815 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS13A-201ENST00000355766 SNAPC2Q13487 334 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 SETDB1Q15047 1291 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 HSP90AB4PQ58FF6 505 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 C17orf99Q6UX52 265 aa8.48□□□□□ -1.05
VPS13A-201ENST00000355766 C15orf52Q6ZUT6 534 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms