RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 FUT8Q9BYC5 575 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 TMOD2Q9NZR1 351 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 UTP11Q9Y3A2 253 aaKnown RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 CTNNA1P35221 906 aaKnown RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 GGCXP38435 758 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 USP14P54578 494 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 ZNF219Q9P2Y4 722 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 RIMS1Q86UR5 1692 aaKnown RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 LIMA1Q9UHB6 759 aaKnown RBP17.15■□□□□ 0.34
PTPRU-201ENST00000345512 ERFEQ4G0M1 354 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 HAUS3Q68CZ6 603 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 GPBP1Q86WP2 473 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 NOA1Q8NC60 698 aaKnown RBP17.15■□□□□ 0.34
PTPRU-201ENST00000345512 GBP2P32456 591 aaPredicted RBP17.15■□□□□ 0.34
PTPRU-201ENST00000345512 CCDC91Q7Z6B0 441 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 FBXL16Q8N461 479 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 PANK4Q9NVE7 773 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 PNPLA7Q6ZV29 1317 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 FTCDO95954 541 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 NTRK3Q16288 839 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 PHF20Q9BVI0 1012 aa17.15■□□□□ 0.34
PTPRU-201ENST00000345512 LRRC47Q8N1G4 583 aaKnown RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 CPVLQ9H3G5 476 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 ZNF804BA4D1E1 1349 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 KIF4AO95239 1232 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 CYP19A1P11511 503 aaPredicted RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 EZRP15311 586 aaKnown RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 EFCAB13Q8IY85 973 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 SRBD1Q8N5C6 995 aaKnown RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 MMS19Q96T76 1030 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 ZC3H12CQ9C0D7 883 aaKnown RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 NSRP1Q9H0G5 558 aaKnown RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 NT5C3AQ9H0P0 336 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 MTRF1LQ9UGC7 380 aaKnown RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 TRIM66O15016 1216 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 USP17L2Q6R6M4 530 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 ZNF512BQ96KM6 892 aaPredicted RBP17.14■□□□□ 0.33
PTPRU-201ENST00000345512 PCDHB13Q9Y5F0 798 aa17.14■□□□□ 0.33
PTPRU-201ENST00000345512 EIF3CLB5ME19 914 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 N4BP1O75113 896 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 CD44P16070 742 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 TNFAIP3P21580 790 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 ADAM9Q13443 819 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 EIF3CQ99613 913 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 NAP1L4Q99733 375 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 GNA14O95837 355 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 VIMP08670 466 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 POTEJP0CG39 1038 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 PRDX5P30044 214 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 CNBD1Q8NA66 436 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 PLVAPQ9BX97 442 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 ARMCX3Q9UH62 379 aaPredicted RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 DNM3Q9UQ16 869 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 KRIT1O00522 736 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 CCDC93Q567U6 631 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 KRT26Q7Z3Y9 468 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 PNKPQ96T60 521 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 MLXIPQ9HAP2 919 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 SAMD15Q9P1V8 674 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 OVOS2A0A0G2JMS6 1433 aa17.13■□□□□ 0.33
PTPRU-201ENST00000345512 A0A087WUV0 522 aaPredicted RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 FKBP3Q00688 224 aaKnown RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 ELOA2Q8IYF1 753 aaPredicted RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 CDCA7Q9BWT1 371 aaPredicted RBP17.13■□□□□ 0.33
PTPRU-201ENST00000345512 CALUO43852 315 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-201ENST00000345512 PIGSQ96S52 555 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 KDM6AO15550 1401 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-201ENST00000345512 ANO9A1A5B4 782 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 PPP1R3GB7ZBB8 358 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 CHMP2AO43633 222 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 XRCC5P13010 732 aaKnown RBP17.12■□□□□ 0.33
PTPRU-201ENST00000345512 DIXDC1Q155Q3 683 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 TMEM132AQ24JP5 1023 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 DGKHQ86XP1 1220 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 COG1Q8WTW3 980 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 U2AF1L4Q8WU68 220 aaKnown RBP17.12■□□□□ 0.33
PTPRU-201ENST00000345512 EHMT1Q9H9B1 1298 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 DCP1AQ9NPI6 582 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-201ENST00000345512 GCNT3O95395 438 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 ITIH6Q6UXX5 1313 aa17.12■□□□□ 0.33
PTPRU-201ENST00000345512 MAGEA9P43362 315 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 CACNB1Q02641 598 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-201ENST00000345512 NNTQ13423 1086 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 NAP1L3Q99457 506 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-201ENST00000345512 PAIP2Q9BPZ3 127 aaKnown RBP17.11■□□□□ 0.33
PTPRU-201ENST00000345512 DPH5Q9H2P9 285 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 STIM2Q9P246 746 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 CAPN11Q9UMQ6 739 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 FRMD4BQ9Y2L6 1034 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 ANKRD62A6NC57 917 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 ZNF185O15231 689 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 ZNF18P17022 549 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 ABCB4P21439 1286 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 KCNQ4P56696 695 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 MFSD14BQ5SR56 506 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 RIN2Q8WYP3 895 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-201ENST00000345512 STMN4Q9H169 189 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-201ENST00000345512 KCND1Q9NSA2 647 aa17.11■□□□□ 0.33
PTPRU-201ENST00000345512 DDX25Q9UHL0 483 aaKnown RBP17.11■□□□□ 0.33
PTPRU-201ENST00000345512 TFR2Q9UP52 801 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms