RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ACTN1P12814 892 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 SLC16A2P36021 539 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 NEK8Q86SG6 692 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 SLFN12Q8IYM2 578 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 RASGRP4Q8TDF6 673 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 PSPC1Q8WXF1 523 aaKnown RBP13.77□□□□□ -0.2
SDC3-201ENST00000336798 VCX3AQ9NNX9 186 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 NEURL1BA8MQ27 555 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 NVLO15381 856 aaKnown RBP13.77□□□□□ -0.2
SDC3-201ENST00000336798 ARHGAP25P42331 645 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 ABCB5Q2M3G0 1257 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.77□□□□□ -0.2
SDC3-201ENST00000336798 POLR3AO14802 1390 aaPredicted RBP13.77□□□□□ -0.21
SDC3-201ENST00000336798 RNF8O76064 485 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 PDE1BQ01064 536 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 BRD3Q15059 726 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 LRRC41Q15345 812 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.77□□□□□ -0.21
SDC3-201ENST00000336798 KCTD16Q68DU8 428 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 RPN1P04843 607 aaKnown RBP13.77□□□□□ -0.21
SDC3-201ENST00000336798 KCNQ4P56696 695 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 CROCCP2Q86T23 111 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 NOSTRINQ8IVI9 506 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 IWS1Q96ST2 819 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 CLIC4Q9Y696 253 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 INO80B-WBP1J3KQ70 363 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 MEIS1O00470 390 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 STMN1P16949 149 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 EEF1GP26641 437 aaKnown RBP13.77□□□□□ -0.21
SDC3-201ENST00000336798 NSFP46459 744 aaKnown RBP13.77□□□□□ -0.21
SDC3-201ENST00000336798 IFNAR2P48551 515 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 RASSF2P50749 326 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 ARHGAP4P98171 946 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 IQCB1Q15051 598 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 GANCQ8TET4 914 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 SYMPKQ92797 1274 aaKnown RBP13.77□□□□□ -0.21
SDC3-201ENST00000336798 INO80BQ9C086 356 aaPredicted RBP13.77□□□□□ -0.21
SDC3-201ENST00000336798 NRBP2Q9NSY0 501 aa13.77□□□□□ -0.21
SDC3-201ENST00000336798 HNRNPDLO14979 420 aaKnown RBP13.76□□□□□ -0.21
SDC3-201ENST00000336798 PFDN6O15212 129 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 GARSP41250 739 aaKnown RBP13.76□□□□□ -0.21
SDC3-201ENST00000336798 EHHADHQ08426 723 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 PABPC4Q13310 644 aaKnown RBP eCLIP13.76□□□□□ -0.216e-7■□□□□ 10.8
SDC3-201ENST00000336798 ODR4Q5SWX8 454 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 FAM160B1Q5W0V3 765 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 IPO11Q9UI26 975 aaKnown RBP13.76□□□□□ -0.21
SDC3-201ENST00000336798 GDAP1Q8TB36 358 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 SDCCAG3Q96C92 435 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 HYOU1Q9Y4L1 999 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 GNGT2O14610 69 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 CLIC2O15247 247 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 SNAP25P60880 206 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 PHEXP78562 749 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 CHRNDQ07001 517 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 MCF2L2Q86YR7 1114 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 OR8K1Q8NGG5 319 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 LRRN2O75325 713 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 IL13P35225 146 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 DCAF15Q66K64 600 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 TRIM58Q8NG06 486 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 MICAL1Q8TDZ2 1067 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 MORC4Q8TE76 937 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 NLRP7Q8WX94 980 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 ENC1O14682 589 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 GPC4O75487 556 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 ZBTB41Q5SVQ8 909 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 IFT122Q9HBG6 1241 aa13.76□□□□□ -0.21
SDC3-201ENST00000336798 LOC102724159A0A0B4J2E5 919 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 PWP2Q15269 919 aaKnown RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 USPL1Q5W0Q7 1092 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 KIAA1841Q6NSI8 718 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 FANCBQ8NB91 859 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 FGD4Q96M96 766 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 SNX25Q9H3E2 840 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 PCDHA1Q9Y5I3 950 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 MRFAP1Q9Y605 127 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 A2MP01023 1474 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 EIF4G3O43432 1585 aaKnown RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 CLTAP09496 248 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 KCTD2Q14681 263 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 WHAMMP3Q1A5X7 153 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 DBNDD1Q9H9R9 158 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 SLC38A10Q9HBR0 1119 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 TYW5A2RUC4 315 aaKnown RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 BTBD18B2RXH4 712 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 LMNB1P20700 586 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 ASPHQ12797 758 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 PDCD7Q8N8D1 485 aaKnown RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 ZNF577Q9BSK1 485 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 BCL2L12Q9HB09 334 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 FANCLQ9NW38 375 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 BCAP29Q9UHQ4 241 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 SCG2P13521 617 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 SMYD4Q8IYR2 804 aaPredicted RBP13.75□□□□□ -0.21
SDC3-201ENST00000336798 USP28Q96RU2 1077 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 DSCC1Q9BVC3 393 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 ZMYND10O75800 440 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 MARK3P27448 753 aa13.75□□□□□ -0.21
SDC3-201ENST00000336798 NKX1-1Q15270 411 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms