RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PCDHB13Q9Y5F0 798 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 STK24Q9Y6E0 443 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 IFT172Q9UG01 1749 aa16.26■□□□□ 0.19
TCOF1-201ENST00000323668 GCNT3O95395 438 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 PPANQ9NQ55 473 aaKnown RBP16.25■□□□□ 0.19
TCOF1-201ENST00000323668 RNF14Q9UBS8 474 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 OVOS2A0A0G2JMS6 1433 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 SRGAP2O75044 1071 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 KIF11P52732 1056 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 PPP1R7Q15435 360 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 KCTD16Q68DU8 428 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 CCDC91Q7Z6B0 441 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 DDX12PQ92771 950 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 BSDC1Q9NW68 430 aaPredicted RBP16.25■□□□□ 0.19
TCOF1-201ENST00000323668 DDX25Q9UHL0 483 aaKnown RBP16.25■□□□□ 0.19
TCOF1-201ENST00000323668 FAM205CA6NFA0 338 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 MYO1CO00159 1063 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 MOCS3O95396 460 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 STAT1P42224 750 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 BTDP43251 543 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 GRIPAP1Q4V328 841 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 RAD9BQ6WBX8 426 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 RASGRP2Q7LDG7 609 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 ATP6V0A2Q9Y487 856 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 PCDHA13Q9Y5I0 950 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 VIMP08670 466 aaKnown RBP16.25■□□□□ 0.19
TCOF1-201ENST00000323668 LRRC41Q15345 812 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 LRRC47Q8N1G4 583 aaKnown RBP16.25■□□□□ 0.19
TCOF1-201ENST00000323668 FBXL16Q8N461 479 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 DYNLL2Q96FJ2 89 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 SCLT1Q96NL6 688 aa16.25■□□□□ 0.19
TCOF1-201ENST00000323668 SLIT1O75093 1534 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 KRIT1O00522 736 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 H2AFZP0C0S5 128 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 FXR1P51114 621 aaKnown RBP eCLIP16.24■□□□□ 0.19
TCOF1-201ENST00000323668 H2AFVQ71UI9 128 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 ANO9A1A5B4 782 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 SPOPO43791 374 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 GRIN1Q05586 938 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 KRT12Q99456 494 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 EPB41L5Q9HCM4 733 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 LIMA1Q9UHB6 759 aaKnown RBP16.24■□□□□ 0.19
TCOF1-201ENST00000323668 AMFRQ9UKV5 643 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 PPFIA4O75335 1185 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 HEXIM1O94992 359 aaKnown RBP16.24■□□□□ 0.19
TCOF1-201ENST00000323668 NT5C2P49902 561 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 UBL4BQ8N7F7 174 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 U2AF1L4Q8WU68 220 aaKnown RBP16.24■□□□□ 0.19
TCOF1-201ENST00000323668 USP17L3A6NCW0 530 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 USP17L4A6NCW7 530 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 CHMP2AO43633 222 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 USP17L1Q7RTZ2 530 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 SPATS2Q86XZ4 545 aaKnown RBP16.24■□□□□ 0.19
TCOF1-201ENST00000323668 BICD1Q96G01 975 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 C8orf37Q96NL8 207 aa16.24■□□□□ 0.19
TCOF1-201ENST00000323668 EPB41L4AQ9HCS5 686 aaPredicted RBP16.24■□□□□ 0.19
TCOF1-201ENST00000323668 TTC19Q6DKK2 380 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-201ENST00000323668 BRINP3Q76B58 766 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 MYCT1Q8N699 235 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 SMCR8Q8TEV9 937 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-201ENST00000323668 PAIP2Q9BPZ3 127 aaKnown RBP16.23■□□□□ 0.19
TCOF1-201ENST00000323668 CTTNBP2NLQ9P2B4 639 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 CAPN7Q9Y6W3 813 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 NMT2O60551 498 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 VSNL1P62760 191 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 COL9A3Q14050 684 aaPredicted RBP16.23■□□□□ 0.19
TCOF1-201ENST00000323668 DPYDQ12882 1025 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 USP17L2Q6R6M4 530 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 CROCCP2Q86T23 111 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 KCNK9Q9NPC2 374 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 ANKRD26Q9UPS8 1709 aa16.23■□□□□ 0.19
TCOF1-201ENST00000323668 A0A1W2PQC6 194 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 CYP2D6P10635 497 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 PTPROQ16827 1216 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 ILDR1Q86SU0 546 aaPredicted RBP16.22■□□□□ 0.19
TCOF1-201ENST00000323668 PHF20Q9BVI0 1012 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 RAB17Q9H0T7 212 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 DCP1AQ9NPI6 582 aaPredicted RBP16.22■□□□□ 0.19
TCOF1-201ENST00000323668 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.22■□□□□ 0.19
TCOF1-201ENST00000323668 KIAA1024Q9UPX6 916 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 PPP4R3AQ6IN85 833 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 EFCAB13Q8IY85 973 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 PLCD3Q8N3E9 789 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 PIGSQ96S52 555 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 COL4A3BPQ9Y5P4 624 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 IRX3P78415 501 aaPredicted RBP16.22■□□□□ 0.19
TCOF1-201ENST00000323668 METTL14Q9HCE5 456 aaKnown RBP16.22■□□□□ 0.19
TCOF1-201ENST00000323668 EXOC3O60645 756 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 USP14P54578 494 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 LRRC63Q05C16 580 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 EMBQ6PCB8 327 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 MAP3K14Q99558 947 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 CHP1Q99653 195 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 HDAC6Q9UBN7 1215 aa16.22■□□□□ 0.19
TCOF1-201ENST00000323668 CASP7P55210 303 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 SLC7A5Q01650 507 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 BZW2Q9Y6E2 419 aaKnown RBP16.21■□□□□ 0.19
TCOF1-201ENST00000323668 ITIH6Q6UXX5 1313 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 A0A087WUV0 522 aaPredicted RBP16.21■□□□□ 0.19
TCOF1-201ENST00000323668 GTF2IP78347 998 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms