RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 BIN2Q9UBW5 565 aaPredicted RBP16.26■□□□□ 0.19
PTPN9-201ENST00000306726 ABCC12Q96J65 1359 aa16.26■□□□□ 0.19
PTPN9-201ENST00000306726 SHTN1A0MZ66 631 aa16.26■□□□□ 0.19
PTPN9-201ENST00000306726 NAPAP54920 295 aa16.26■□□□□ 0.19
PTPN9-201ENST00000306726 CCDC40Q4G0X9 1142 aa16.26■□□□□ 0.19
PTPN9-201ENST00000306726 CEP57Q86XR8 500 aa16.26■□□□□ 0.19
PTPN9-201ENST00000306726 CRAMP1Q96RY5 1269 aa16.26■□□□□ 0.19
PTPN9-201ENST00000306726 EBAG9O00559 213 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 PAFAH1B1P43034 410 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 CHRNDQ07001 517 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 IKQ13123 557 aaPredicted RBP16.25■□□□□ 0.19
PTPN9-201ENST00000306726 STAG2Q8N3U4 1231 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 TLDC2A0PJX2 215 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 CYLC1P35663 651 aaPredicted RBP16.25■□□□□ 0.19
PTPN9-201ENST00000306726 CRY2Q49AN0 593 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 GRIPAP1Q4V328 841 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 SRLQ86TD4 932 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 TCP11L1Q9NUJ3 509 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 FRMD3A2A2Y4 597 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 HOXA10P31260 410 aaPredicted RBP16.25■□□□□ 0.19
PTPN9-201ENST00000306726 PICALMQ13492 652 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 UBE3CQ15386 1083 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 TUBGCP2Q9BSJ2 902 aa16.25■□□□□ 0.19
PTPN9-201ENST00000306726 TMX4Q9H1E5 349 aaPredicted RBP16.25■□□□□ 0.19
PTPN9-201ENST00000306726 ZSCAN5CA6NGD5 496 aaPredicted RBP16.24■□□□□ 0.19
PTPN9-201ENST00000306726 MYBL2P10244 700 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 NPR1P16066 1061 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 ALDH1B1P30837 517 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 APBA1Q02410 837 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 TCP11X2Q5H9J9 407 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 SOGA3Q5TF21 947 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 IFIH1Q9BYX4 1025 aaKnown RBP16.24■□□□□ 0.19
PTPN9-201ENST00000306726 A0A1B0GTH6 734 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 MAPKAPK5Q8IW41 473 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 ZNF444Q8N0Y2 327 aaPredicted RBP16.24■□□□□ 0.19
PTPN9-201ENST00000306726 EXOC4Q96A65 974 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 ANKRD2Q9GZV1 360 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 IVLP07476 585 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 TNNI2P48788 182 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 BCS1LQ9Y276 419 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 C10orf71Q711Q0 1435 aa16.24■□□□□ 0.19
PTPN9-201ENST00000306726 TSPY3P0CV98 308 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 TSPY8P0CW00 308 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 DIXDC1Q155Q3 683 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 STYK1Q6J9G0 422 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 RSRC2Q7L4I2 434 aaKnown RBP16.23■□□□□ 0.19
PTPN9-201ENST00000306726 FOXP1Q9H334 677 aaPredicted RBP16.23■□□□□ 0.19
PTPN9-201ENST00000306726 USO1O60763 962 aaKnown RBP16.23■□□□□ 0.19
PTPN9-201ENST00000306726 BBOX1O75936 387 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 PRDX5P30044 214 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 RAPGEF1Q13905 1077 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 SECISBP2LQ93073 1101 aaKnown RBP16.23■□□□□ 0.19
PTPN9-201ENST00000306726 MPHOSPH10O00566 681 aaKnown RBP16.23■□□□□ 0.19
PTPN9-201ENST00000306726 TUBB4AP04350 444 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 SRBD1Q8N5C6 995 aaKnown RBP16.23■□□□□ 0.19
PTPN9-201ENST00000306726 LRRC1Q9BTT6 524 aa16.23■□□□□ 0.19
PTPN9-201ENST00000306726 PPP1R3GB7ZBB8 358 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 POTEB2H3BUK9 544 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 KRT14P02533 472 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 MAGEA1P43355 309 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 IRX3P78415 501 aaPredicted RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 GRAPQ13588 217 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 PAXIP1Q6ZW49 1069 aaPredicted RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 GRAPLQ8TC17 118 aaPredicted RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 SELENOOQ9BVL4 669 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 BSDC1Q9NW68 430 aaPredicted RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 CAPN7Q9Y6W3 813 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 KLRK1P26718 216 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 GUCY2DQ02846 1103 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 COG1Q8WTW3 980 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 NHEJ1Q9H9Q4 299 aaPredicted RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 TMTC2Q8N394 836 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 DMGDHQ9UI17 866 aaKnown RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 L1RE1Q9UN81 338 aa16.22■□□□□ 0.19
PTPN9-201ENST00000306726 FRMPD2Q68DX3 1309 aaPredicted RBP16.22■□□□□ 0.19
PTPN9-201ENST00000306726 ZNF18P17022 549 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 ERCC5P28715 1186 aaPredicted RBP16.21■□□□□ 0.19
PTPN9-201ENST00000306726 EHHADHQ08426 723 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 MASTLQ96GX5 879 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 CNOT6LQ96LI5 555 aaKnown RBP16.21■□□□□ 0.19
PTPN9-201ENST00000306726 PANX2Q96RD6 677 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 TMEM60Q9H2L4 133 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 GPCPD1Q9NPB8 672 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 HYOU1Q9Y4L1 999 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 H0YIN7 160 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 TRAF5O00463 557 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 TACC1O75410 805 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 ARID4AP29374 1257 aaPredicted RBP16.21■□□□□ 0.19
PTPN9-201ENST00000306726 CC2D2BQ6DHV5 1058 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 C8orf74Q6P047 294 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 SLC51AQ86UW1 340 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 CLEC10AQ8IUN9 316 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 CNKSR1Q969H4 720 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 XDHP47989 1333 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 NKRFO15226 690 aaKnown RBP eCLIP16.21■□□□□ 0.198e-7■□□□□ 8.8
PTPN9-201ENST00000306726 HSF2BPO75031 334 aa16.21■□□□□ 0.19
PTPN9-201ENST00000306726 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.21■□□□□ 0.19
PTPN9-201ENST00000306726 RCCD1A6NED2 376 aa16.2■□□□□ 0.18
PTPN9-201ENST00000306726 RPS8P62241 208 aaKnown RBP16.2■□□□□ 0.18
PTPN9-201ENST00000306726 MDM2Q00987 491 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms