RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 USP17L3A6NCW0 530 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 USP17L4A6NCW7 530 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 NKRFO15226 690 aaKnown RBP eCLIP16.34■□□□□ 0.21
CCNF-201ENST00000293968 USP17L1Q7RTZ2 530 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 GIMAP8Q8ND71 665 aaPredicted RBP16.34■□□□□ 0.21
CCNF-201ENST00000293968 CCDC43Q96MW1 224 aaKnown RBP16.34■□□□□ 0.21
CCNF-201ENST00000293968 DUSP9Q99956 384 aaKnown RBP16.34■□□□□ 0.21
CCNF-201ENST00000293968 ANAPC4Q9UJX5 808 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 TSPY3P0CV98 308 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 TSPY8P0CW00 308 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 LRRC41Q15345 812 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 CALML4Q96GE6 196 aa16.34■□□□□ 0.21
CCNF-201ENST00000293968 TULP1O00294 542 aaPredicted RBP16.33■□□□□ 0.21
CCNF-201ENST00000293968 HPDP32754 393 aaPredicted RBP16.33■□□□□ 0.21
CCNF-201ENST00000293968 IL6STP40189 918 aaPredicted RBP16.33■□□□□ 0.21
CCNF-201ENST00000293968 GUCY2DQ02846 1103 aa16.33■□□□□ 0.21
CCNF-201ENST00000293968 MECOMQ03112 1051 aa16.33■□□□□ 0.21
CCNF-201ENST00000293968 GFPT1Q06210 699 aaPredicted RBP16.33■□□□□ 0.21
CCNF-201ENST00000293968 SOGA3Q5TF21 947 aa16.33■□□□□ 0.21
CCNF-201ENST00000293968 FNBP4Q8N3X1 1017 aaPredicted RBP16.33■□□□□ 0.21
CCNF-201ENST00000293968 BRIP1Q9BX63 1249 aa16.33■□□□□ 0.21
CCNF-201ENST00000293968 NFU1Q9UMS0 254 aa16.33■□□□□ 0.21
CCNF-201ENST00000293968 MYO5AQ9Y4I1 1855 aaKnown RBP16.33■□□□□ 0.2
CCNF-201ENST00000293968 CAMTA1Q9Y6Y1 1673 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 FAM170AA1A519 330 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 KRT14P02533 472 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 KCTD19Q17RG1 926 aaPredicted RBP16.33■□□□□ 0.2
CCNF-201ENST00000293968 DCP1AQ9NPI6 582 aaPredicted RBP16.33■□□□□ 0.2
CCNF-201ENST00000293968 CAPN7Q9Y6W3 813 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 LRRC53A6NM62 1247 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 ERVV-1B6SEH8 477 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 RHOBTB3O94955 611 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 PRDX5P30044 214 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 AMPD3Q01432 767 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 BRINP3Q76B58 766 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 OTUD6BQ8N6M0 293 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 ZHX3Q9H4I2 956 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 STIM2Q9P246 746 aa16.33■□□□□ 0.2
CCNF-201ENST00000293968 BCCIPQ9P287 314 aaKnown RBP eCLIP16.33■□□□□ 0.2
CCNF-201ENST00000293968 GOLGA8KD6RF30 607 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 FTCDO95954 541 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 CREG2Q8IUH2 290 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 ZNF444Q8N0Y2 327 aaPredicted RBP16.32■□□□□ 0.2
CCNF-201ENST00000293968 EPB41L5Q9HCM4 733 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 ZNF263O14978 683 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 KLHL7Q8IXQ5 586 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 CCDC155Q8N6L0 562 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 RETREG2Q8NC44 543 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 TSEN2Q8NCE0 465 aaKnown RBP16.32■□□□□ 0.2
CCNF-201ENST00000293968 SAP30BPQ9UHR5 308 aaKnown RBP16.32■□□□□ 0.2
CCNF-201ENST00000293968 PCDHA6Q9UN73 950 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 PCDHA8Q9Y5H6 950 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 EPHB6O15197 1021 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 KLRC4O43908 158 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 SETQ01105 290 aaPredicted RBP16.32■□□□□ 0.2
CCNF-201ENST00000293968 NNTQ13423 1086 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 CCDC40Q4G0X9 1142 aa16.32■□□□□ 0.2
CCNF-201ENST00000293968 RBM12Q9NTZ6 932 aaKnown RBP16.32■□□□□ 0.2
CCNF-201ENST00000293968 PACSIN2Q9UNF0 486 aaPredicted RBP16.32■□□□□ 0.2
CCNF-201ENST00000293968 EPHB4P54760 987 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 KCNB1Q14721 858 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 MEA1Q16626 185 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 NOX5Q96PH1 765 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 TRIM9Q9C026 710 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 NDST4Q9H3R1 872 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 TBC1D7Q9P0N9 293 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 ARHGAP20Q9P2F6 1191 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 AKAP11Q9UKA4 1901 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 ZSCAN5CA6NGD5 496 aaPredicted RBP16.31■□□□□ 0.2
CCNF-201ENST00000293968 OR52Z1P0C646 297 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 TCP1P17987 556 aaKnown RBP16.31■□□□□ 0.2
CCNF-201ENST00000293968 KLRK1P26718 216 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 CNNM4Q6P4Q7 775 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 BIN2Q9UBW5 565 aaPredicted RBP16.31■□□□□ 0.2
CCNF-201ENST00000293968 AENQ8WTP8 325 aaKnown RBP16.31■□□□□ 0.2
CCNF-201ENST00000293968 SH2D4AQ9H788 454 aa16.31■□□□□ 0.2
CCNF-201ENST00000293968 EIF3HO15372 352 aaKnown RBP eCLIP16.3■□□□□ 0.2
CCNF-201ENST00000293968 EPS15P42566 896 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 SV2BQ7L1I2 683 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 SLC44A5Q8NCS7 719 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 KRT12Q99456 494 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 KANSL2Q9H9L4 492 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 HEXIM1O94992 359 aaKnown RBP16.3■□□□□ 0.2
CCNF-201ENST00000293968 C4orf32Q8N8J7 132 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 CCDC87Q9NVE4 849 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 SLC1A4P43007 532 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 GUCY1A3Q02108 690 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 APBA1Q02410 837 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 VWA3BQ502W6 1294 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 RASSF10A6NK89 507 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 CRKLP46109 303 aaKnown RBP16.3■□□□□ 0.2
CCNF-201ENST00000293968 CFAP221Q4G0U5 840 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 ODF2Q5BJF6 829 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 IFT20Q8IY31 132 aa16.3■□□□□ 0.2
CCNF-201ENST00000293968 MYH7P12883 1935 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 GOLGA6L10A6NI86 522 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 HSPA2P54652 639 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 MMS22LQ6ZRQ5 1243 aa16.29■□□□□ 0.2
CCNF-201ENST00000293968 FAM84BQ96KN1 310 aaPredicted RBP16.29■□□□□ 0.2
CCNF-201ENST00000293968 KBTBD4Q9NVX7 518 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms