RNA–Protein interactions for RNA: ENST00000272638.13

UBXN4-201, Transcript of UBX domain protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBXN4, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-201ENST00000272638 ABHD10Q9NUJ1 306 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 ADD3Q9UEY8 706 aaKnown RBP13.94□□□□□ -0.18
UBXN4-201ENST00000272638 MYO6Q9UM54 1294 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 MRC1P22897 1456 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 E9PMD0 336 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 FAM13AO94988 1023 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 CAPN2P17655 700 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 NR1I3Q14994 352 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 SECISBP2LQ93073 1101 aaKnown RBP13.94□□□□□ -0.18
UBXN4-201ENST00000272638 TDRD3Q9H7E2 651 aaKnown RBP13.94□□□□□ -0.18
UBXN4-201ENST00000272638 AGPAT5Q9NUQ2 364 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 PANK4Q9NVE7 773 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 INTS13Q9NVM9 706 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 PPP1R3GB7ZBB8 358 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 NDUFA10O95299 355 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 GCNT3O95395 438 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 FAM26FQ5R3K3 315 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 LSM14BQ9BX40 385 aaKnown RBP13.94□□□□□ -0.18
UBXN4-201ENST00000272638 CDC23Q9UJX2 597 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 DAGLAQ9Y4D2 1042 aa13.94□□□□□ -0.18
UBXN4-201ENST00000272638 H0YIN7 160 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 PPP1R12BO60237 982 aaPredicted RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 GYPCP04921 128 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 SEPT2Q15019 361 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 MYOCDQ8IZQ8 938 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 ZNF384Q8TF68 577 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 SAR1BQ9Y6B6 198 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 PHLPP2Q6ZVD8 1323 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 PNMA6AP0CW24 399 aaPredicted RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 RASSF7Q02833 373 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 PRKG1Q13976 671 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 ODF2Q5BJF6 829 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 IQCEQ6IPM2 695 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 SLC30A10Q6XR72 485 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 AMIGO3Q86WK7 504 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 REXO1L1PQ8IX06 675 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 MB21D1Q8N884 522 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 PDE11AQ9HCR9 933 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 POLLQ9UGP5 575 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 ANAPC4Q9UJX5 808 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 AFDNP55196 1824 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 TMEM110-MUSTN1A8MSY1 372 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 CLIC2O15247 247 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 SSR1P43307 286 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 UTP14CQ5TAP6 766 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 ANKRD40Q6AI12 368 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 GPR161Q8N6U8 529 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 DDX12PQ92771 950 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 NAA15Q9BXJ9 866 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 MAD2L2Q9UI95 211 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 DDX41Q9UJV9 622 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 A0A1B0GTH6 734 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 CTIFO43310 598 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 TRIM14Q14142 442 aa13.93□□□□□ -0.18
UBXN4-201ENST00000272638 ARL6IP4Q66PJ3 421 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 GSPT2Q8IYD1 628 aaKnown RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 GJD4Q96KN9 370 aaPredicted RBP13.93□□□□□ -0.18
UBXN4-201ENST00000272638 LRRC37A3O60309 1634 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 NPHP3-ACAD11A0A0J9YXS1 232 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 CYTH3O43739 400 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 KIF20AO95235 890 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 CCNE1P24864 410 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 PMS1P54277 932 aaKnown RBP13.92□□□□□ -0.18
UBXN4-201ENST00000272638 NFIAQ12857 509 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 SF3A3Q12874 501 aaKnown RBP eCLIP13.92□□□□□ -0.181e-9■■■■■ 34.6
UBXN4-201ENST00000272638 LLGL1Q15334 1064 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 EHBP1Q8NDI1 1231 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 ANKRD7Q92527 254 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 STXBP3O00186 592 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 LONRF2Q1L5Z9 754 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 MAP9Q49MG5 647 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 RCSD1Q6JBY9 416 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 SRGAP1Q7Z6B7 1085 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 LARGE2Q8N3Y3 721 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 CCDC155Q8N6L0 562 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 CSRNP1Q96S65 589 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 GTPBP4Q9BZE4 634 aaKnown RBP13.92□□□□□ -0.18
UBXN4-201ENST00000272638 BCS1LQ9Y276 419 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 POTEB3A0JP26 581 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 POTECB2RU33 542 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 CETN3O15182 167 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 POTEBQ6S5H4 581 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 KLHL7Q8IXQ5 586 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 MYCT1Q8N699 235 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 LRRC27Q9C0I9 530 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 SUGCTQ9HAC7 445 aa13.92□□□□□ -0.18
UBXN4-201ENST00000272638 CCDC84Q86UT8 332 aaPredicted RBP13.91□□□□□ -0.18
UBXN4-201ENST00000272638 ADGRF4Q8IZF3 695 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 NEDD1Q8NHV4 660 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 SH2D3AQ9BRG2 576 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 GOPCQ9HD26 462 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 DNM3Q9UQ16 869 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 CHRNA5P30532 468 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 KLHL30Q0D2K2 578 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 KRT27Q7Z3Y8 459 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 MAATS1Q7Z4T9 603 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 PANX2Q96RD6 677 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 TRIM31Q9BZY9 425 aa13.91□□□□□ -0.18
UBXN4-201ENST00000272638 NHEJ1Q9H9Q4 299 aaPredicted RBP13.91□□□□□ -0.18
UBXN4-201ENST00000272638 RSPH14Q9UHP6 348 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms