RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.42□□□□□ -0.58
VPS41-201ENST00000265745 NFIBO00712 420 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 KIAA0355O15063 1070 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 KDM4AO75164 1064 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 ASGR1P07306 291 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 CDK7P50613 346 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 FAAP100Q0VG06 881 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 SHHQ15465 462 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 CCDC178Q5BJE1 867 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 PPP1R15BQ5SWA1 713 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 TAPT1Q6NXT6 567 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 Q7L0L9 218 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 IQCA1Q86XH1 822 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 MORC4Q8TE76 937 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 CLEC4DQ8WXI8 215 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 GLT1D1Q96MS3 346 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 ZKSCAN3Q9BRR0 538 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 IL25Q9H293 177 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 TMEM39AQ9NV64 488 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 ZSWIM5Q9P217 1185 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 CTNNA3Q9UI47 895 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 PNMA2Q9UL42 364 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 ALPK3Q96L96 1907 aa11.42□□□□□ -0.58
VPS41-201ENST00000265745 DCDC2CA8MYV0 355 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 SMPD1P17405 629 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 IMMTQ16891 758 aaKnown RBP11.41□□□□□ -0.58
VPS41-201ENST00000265745 C9orf50Q5SZB4 431 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 GPATCH4Q5T3I0 446 aaKnown RBP11.41□□□□□ -0.58
VPS41-201ENST00000265745 IQSEC1Q6DN90 963 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 NOL8Q76FK4 1167 aaKnown RBP11.41□□□□□ -0.58
VPS41-201ENST00000265745 EEPD1Q7L9B9 569 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 ZSCAN10Q96SZ4 725 aaPredicted RBP11.41□□□□□ -0.58
VPS41-201ENST00000265745 GPHNQ9NQX3 736 aaPredicted RBP11.41□□□□□ -0.58
VPS41-201ENST00000265745 PDGFCQ9NRA1 345 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 MTMR10Q9NXD2 777 aa11.41□□□□□ -0.58
VPS41-201ENST00000265745 PARP14Q460N5 1801 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 LOC102724159A0A0B4J2E5 919 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 B4E1Z4 1266 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 ARVCFO00192 962 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 DYNC1LI2O43237 492 aaPredicted RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 GOLGA8HP0CJ92 632 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 GSPT1P15170 499 aaKnown RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 RAG1P15918 1043 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 EPHB4P54760 987 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 BEX3Q00994 111 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 PWP2Q15269 919 aaKnown RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 TMEM63BQ5T3F8 832 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 TTC22Q5TAA0 569 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 FAM109BQ6ICB4 259 aaPredicted RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 FBXO16Q8IX29 292 aaPredicted RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 ENAHQ8N8S7 591 aaPredicted RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 PNMA1Q8ND90 353 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 VTI1AQ96AJ9 217 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 UBA5Q9GZZ9 404 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 VTA1Q9NP79 307 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 ADD3Q9UEY8 706 aaKnown RBP11.4□□□□□ -0.58
VPS41-201ENST00000265745 TBX21Q9UL17 535 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 Q9Y3F1 56 aa11.4□□□□□ -0.58
VPS41-201ENST00000265745 WDR19Q8NEZ3 1342 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 MYH8P13535 1937 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 A0A0U1RQG5 324 aaPredicted RBP11.39□□□□□ -0.59
VPS41-201ENST00000265745 PTPDC1A2A3K4 754 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 TIMP1P01033 207 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 PTGS1P23219 599 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 ALDH5A1P51649 535 aaPredicted RBP11.39□□□□□ -0.59
VPS41-201ENST00000265745 RPS6P62753 249 aaKnown RBP11.39□□□□□ -0.59
VPS41-201ENST00000265745 IRX6P78412 446 aaPredicted RBP11.39□□□□□ -0.59
VPS41-201ENST00000265745 FSCN1Q16658 493 aaKnown RBP11.39□□□□□ -0.59
VPS41-201ENST00000265745 CXCL17Q6UXB2 119 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 RNF207Q6ZRF8 634 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 KIAA1211Q6ZU35 1233 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 TLK2Q86UE8 772 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 GPIHBP1Q8IV16 184 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 RGS22Q8NE09 1264 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 KRT23Q9C075 422 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 AP5M1Q9H0R1 490 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 CPVLQ9H3G5 476 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 KAT14Q9H8E8 782 aa11.39□□□□□ -0.59
VPS41-201ENST00000265745 MROH7Q68CQ1 1323 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 COL11A1P12107 1806 aaPredicted RBP11.38□□□□□ -0.59
VPS41-201ENST00000265745 TTLL13PA6NNM8 815 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 CABYRO75952 493 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 CALML3P27482 149 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 TIE1P35590 1138 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 DUSP28Q4G0W2 176 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 SLC30A10Q6XR72 485 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 FAM126BQ8IXS8 530 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 ADGRF4Q8IZF3 695 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 SLC43A3Q8NBI5 491 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 WDR11Q9BZH6 1224 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 CNNM2Q9H8M5 875 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 STXBP5LQ9Y2K9 1186 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 SMCHD1A6NHR9 2005 aa11.38□□□□□ -0.59
VPS41-201ENST00000265745 GRIN2DO15399 1336 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 TNKSO95271 1327 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 RBM47A0AV96 593 aaKnown RBP11.37□□□□□ -0.59
VPS41-201ENST00000265745 ZEB2O60315 1214 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 CD4P01730 458 aa11.37□□□□□ -0.59
VPS41-201ENST00000265745 PARP1P09874 1014 aaKnown RBP11.37□□□□□ -0.59
VPS41-201ENST00000265745 EDNRBP24530 442 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms