RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF577Q9BSK1 485 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 RPAP3Q9H6T3 665 aaPredicted RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 STK17AQ9UEE5 414 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 SPEF2Q9C093 1822 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 ESYT2A0FGR8 921 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 TRAF5O00463 557 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 MYCNP04198 464 aaPredicted RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 COL9A3Q14050 684 aaPredicted RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 ILDR1Q86SU0 546 aaPredicted RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 LDHDQ86WU2 507 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 OTUD5Q96G74 571 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 ZMYND12Q9H0C1 365 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 ADD3Q9UEY8 706 aaKnown RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 POTEB2H3BUK9 544 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 TRIM21P19474 475 aaKnown RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 MAP3K9P80192 1104 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 CYP4A11Q02928 519 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 RAD51AP2Q09MP3 1159 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 LONRF3Q496Y0 759 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 RNF207Q6ZRF8 634 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 SLC51AQ86UW1 340 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 CSGALNACT2Q8N6G5 542 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 ACER1Q8TDN7 264 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 FAM217BQ9NTX9 383 aaPredicted RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 PNMA3Q9UL41 463 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 UBR2Q8IWV8 1755 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 FAM205CA6NFA0 338 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 DDNO94850 711 aaPredicted RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 KRT13P13646 458 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 ATP2C1P98194 919 aaPredicted RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 ZNF384Q8TF68 577 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 UPF1Q92900 1129 aaKnown RBP eCLIP12.94□□□□□ -0.346e-11■■■■■ 35.4
VPS4A-201ENST00000254950 RNF146Q9NTX7 359 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 KIAA1024Q9UPX6 916 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 NUP188Q5SRE5 1749 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 UBE2Q2LH0YL09 131 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 ZSCAN12O43309 604 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 RPN1P04843 607 aaKnown RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 FGRP09769 529 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 FANCCQ00597 558 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 CT47A1Q5JQC4 288 aaPredicted RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 FMR1NBQ8N0W7 255 aaPredicted RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 LARP4BQ92615 738 aaKnown RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 CDHR1Q96JP9 859 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 PCDHAC2Q9Y5I4 1007 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 MRVI1Q9Y6F6 885 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 MYH14Q7Z406 1995 aaKnown RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 YDJCA8MPS7 323 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 EIF2AK2P19525 551 aaKnown RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 ARHGAP29Q52LW3 1261 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 SNRNP48Q6IEG0 339 aaKnown RBP12.94□□□□□ -0.34
VPS4A-201ENST00000254950 USP37Q86T82 979 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 SCYL3Q8IZE3 742 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 MNS1Q8NEH6 495 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 SLC5A4Q9NY91 659 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 FBXO40Q9UH90 709 aa12.94□□□□□ -0.34
VPS4A-201ENST00000254950 NHSQ6T4R5 1651 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 TRMT44Q8IYL2 757 aaKnown RBP12.93□□□□□ -0.34
VPS4A-201ENST00000254950 NELFBQ8WX92 580 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 AZI2Q9H6S1 392 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 TMX2Q9Y320 296 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 PPP2R3BQ9Y5P8 575 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 MYL1P05976 194 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 USP11P51784 963 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 SMTNP53814 917 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 NBPF12Q5TAG4 269 aaPredicted RBP12.93□□□□□ -0.34
VPS4A-201ENST00000254950 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.93□□□□□ -0.34
VPS4A-201ENST00000254950 GMCL1Q96IK5 515 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 ECE1P42892 770 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 COG2Q14746 738 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 SPA17Q15506 151 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 CCDC70Q6NSX1 233 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 KIAA1328Q86T90 577 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 PNMA8AQ86V59 439 aaPredicted RBP12.93□□□□□ -0.34
VPS4A-201ENST00000254950 CCDC112Q8NEF3 446 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 GOLPH3LQ9H4A5 285 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 DISC1Q9NRI5 854 aa12.93□□□□□ -0.34
VPS4A-201ENST00000254950 ZNF75DP51815 510 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 HS1BP3Q53T59 392 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 OTUD6AQ7L8S5 288 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 MYCT1Q8N699 235 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 FSD2A1L4K1 749 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 CETN3O15182 167 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 PLCG1P19174 1290 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 CCND2P30279 289 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 TDRD12Q587J7 1177 aaKnown RBP12.92□□□□□ -0.34
VPS4A-201ENST00000254950 VPS36Q86VN1 386 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 GRAMD1CQ8IYS0 662 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 FAM20AQ96MK3 541 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 TRERF1Q96PN7 1200 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 RMDN3Q96TC7 470 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 EVX2Q03828 476 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 UBXN1Q04323 297 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 SHC4Q6S5L8 630 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 GMCL1P1Q8NEA9 526 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 IFT74Q96LB3 600 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 RIOX1Q9H6W3 641 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 ELP3Q9H9T3 547 aa12.92□□□□□ -0.34
VPS4A-201ENST00000254950 MLXIPQ9HAP2 919 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms