RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	C19orf81	C9J6K1	198 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	IRF6	O14896	467 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	LETM2	Q2VYF4	491 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	PPP1R18	Q6NYC8	613 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	KRT25	Q7Z3Z0	450 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	ANKRD13A	Q8IZ07	590 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	JMY	Q8N9B5	988 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	TBC1D5	Q92609	795 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	OTUD5	Q96G74	571 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	AGBL1	Q96MI9	1066 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	CEP131	Q9UPN4	1083 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	SCN4A	P35499	1836 aa		11.94	□□□□□ -0.5
NECAP1-223	ENST00000640091	DCAF8L1	A6NGE4	600 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	MEIS2	O14770	477 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	OPLAH	O14841	1288 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	CCNT1	O60563	726 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	HOXA13	P31271	388 aa	Predicted RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	TRAPPC10	P48553	1259 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	CLK2	P49760	499 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	NDUFA8	P51970	172 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	SNW1	Q13573	536 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	SHC4	Q6S5L8	630 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	KRI1	Q8N9T8	703 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	WNK4	Q96J92	1243 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	FBXO2	Q9UK22	296 aa	Predicted RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	PTPRE	P23469	700 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	LDHD	Q86WU2	507 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	MRPS27	Q92552	414 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	SYAP1	Q96A49	352 aa	Predicted RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	P2RX7	Q99572	595 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	RAVER2	Q9HCJ3	691 aa	Known RBP	11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	TMOD4	Q9NZQ9	345 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	DOCK1	Q14185	1865 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	WDR90	Q96KV7	1748 aa		11.93	□□□□□ -0.5
NECAP1-223	ENST00000640091	ZNF536	O15090	1300 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091		A0A1W2PQ27	194 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091		A0A1W2PQ64	194 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091		A0A1W2PQD8	194 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	EDIL3	O43854	480 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	CMA1	P23946	247 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	CCDC183	Q5T5S1	534 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	ARMC9	Q7Z3E5	817 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	NEK8	Q86SG6	692 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	ENGASE	Q8NFI3	743 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	ATG4C	Q96DT6	458 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	PPP1R9A	Q9ULJ8	1098 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	SRPRB	Q9Y5M8	271 aa	Known RBP	11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	CFB	P00751	764 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	IL17A	Q16552	155 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	MAP3K11	Q16584	847 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	TREML2	Q5T2D2	321 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	CCDC73	Q6ZRK6	1079 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	USP49	Q70CQ1	688 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	GAS2L3	Q86XJ1	694 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	ERO1B	Q86YB8	467 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	C4orf32	Q8N8J7	132 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	PANK2	Q9BZ23	570 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	CSRNP2	Q9H175	543 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	TMEM60	Q9H2L4	133 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	SLC38A10	Q9HBR0	1119 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	CCPG1	Q9ULG6	757 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	SMCHD1	A6NHR9	2005 aa		11.92	□□□□□ -0.5
NECAP1-223	ENST00000640091	VWA3A	A6NCI4	1184 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	VWA5A	O00534	786 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	CUTA	O60888	179 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	ICAM1	P05362	532 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	PFKFB1	P16118	471 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	ATP2C1	P98194	919 aa	Predicted RBP	11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	FAM160A1	Q05DH4	1040 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	PPAT	Q06203	517 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	CATSPERG	Q6ZRH7	1159 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	FCHSD1	Q86WN1	690 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	RBM46	Q8TBY0	533 aa	Known RBP	11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	C12orf42	Q96LP6	360 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	HOMER2	Q9NSB8	354 aa		11.91	□□□□□ -0.5
NECAP1-223	ENST00000640091	TDP2	O95551	362 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	ALAS1	P13196	640 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	COG2	Q14746	738 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	SH3D19	Q5HYK7	790 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	RESP18	Q5W5W9	173 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	CKAP2L	Q8IYA6	745 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	OPTN	Q96CV9	577 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	EPSTI1	Q96J88	318 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	NUP62CL	Q9H1M0	184 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	SPDYE5	A6NIY4	337 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	ZNF202	O95125	648 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	BMP15	O95972	392 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	CDC25A	P30304	524 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	LDLRAD1	Q5T700	205 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	GADL1	Q6ZQY3	521 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	SLC10A4	Q96EP9	437 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	UIMC1	Q96RL1	719 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	GLT8D2	Q9H1C3	349 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	TNMD	Q9H2S6	317 aa		11.9	□□□□□ -0.5
NECAP1-223	ENST00000640091	SPDYE3	A6NKU9	549 aa		11.89	□□□□□ -0.51
NECAP1-223	ENST00000640091	PEX10	O60683	326 aa		11.89	□□□□□ -0.51
NECAP1-223	ENST00000640091	ZBED4	O75132	1171 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms