RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 TNFAIP2Q03169 654 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 CCDC96Q2M329 555 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 ZNF697Q5TEC3 545 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 TTBK2Q6IQ55 1244 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 FAM161BQ96MY7 647 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 RANBP17Q9H2T7 1088 aaKnown RBP21.79■■□□□ 1.08
CLN6-220ENST00000637450 RWDD1Q9H446 243 aaPredicted RBP21.79■■□□□ 1.08
CLN6-220ENST00000637450 CCPG1Q9ULG6 757 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 ASTN1O14525 1302 aa21.79■■□□□ 1.08
CLN6-220ENST00000637450 SLC16A2P36021 539 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 FPGSQ05932 587 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 RILPL2Q969X0 211 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 VTI1AQ96AJ9 217 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 TBX21Q9UL17 535 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 GNEQ9Y223 722 aaKnown RBP21.78■■□□□ 1.08
CLN6-220ENST00000637450 MROH7Q68CQ1 1323 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 CCDC171Q6TFL3 1326 aa21.78■■□□□ 1.08
CLN6-220ENST00000637450 A0A0U1RQG5 324 aaPredicted RBP21.77■■□□□ 1.08
CLN6-220ENST00000637450 ARVCFO00192 962 aa21.77■■□□□ 1.08
CLN6-220ENST00000637450 DLL1O00548 723 aa21.77■■□□□ 1.08
CLN6-220ENST00000637450 TIMP1P01033 207 aa21.77■■□□□ 1.08
CLN6-220ENST00000637450 HAND2P61296 217 aa21.77■■□□□ 1.08
CLN6-220ENST00000637450 B4GALNT3Q6L9W6 998 aa21.77■■□□□ 1.08
CLN6-220ENST00000637450 SEMA6BQ9H3T3 888 aa21.77■■□□□ 1.08
CLN6-220ENST00000637450 DDX49Q9Y6V7 483 aaKnown RBP21.77■■□□□ 1.08
CLN6-220ENST00000637450 PCP11498 1178 aaKnown RBP21.76■■□□□ 1.07
CLN6-220ENST00000637450 SDSP20132 328 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 BEX3Q00994 111 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 AKNAD1Q5T1N1 836 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 SYDE2Q5VT97 1194 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 TAPT1Q6NXT6 567 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 NSMFQ6X4W1 530 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 MFSD6Q6ZSS7 791 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 NOL8Q76FK4 1167 aaKnown RBP21.76■■□□□ 1.07
CLN6-220ENST00000637450 CHD1LQ86WJ1 897 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 PLEKHM2Q8IWE5 1019 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 RNPC3Q96LT9 517 aaKnown RBP21.76■■□□□ 1.07
CLN6-220ENST00000637450 TTC14Q96N46 770 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 OSBPL3Q9H4L5 887 aa21.76■■□□□ 1.07
CLN6-220ENST00000637450 IGHDP01880 384 aa21.75■■□□□ 1.07
CLN6-220ENST00000637450 SMPD1P17405 629 aa21.75■■□□□ 1.07
CLN6-220ENST00000637450 IQSEC1Q6DN90 963 aa21.75■■□□□ 1.07
CLN6-220ENST00000637450 MORC4Q8TE76 937 aa21.75■■□□□ 1.07
CLN6-220ENST00000637450 PURBQ96QR8 312 aaKnown RBP21.75■■□□□ 1.07
CLN6-220ENST00000637450 GPCPD1Q9NPB8 672 aa21.75■■□□□ 1.07
CLN6-220ENST00000637450 PDGFCQ9NRA1 345 aa21.75■■□□□ 1.07
CLN6-220ENST00000637450 FRMPD2Q68DX3 1309 aaPredicted RBP21.75■■□□□ 1.07
CLN6-220ENST00000637450 PDHBP11177 359 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 MFAP1P55081 439 aaKnown RBP21.74■■□□□ 1.07
CLN6-220ENST00000637450 NUCB1Q02818 461 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 BAATQ14032 418 aaPredicted RBP21.74■■□□□ 1.07
CLN6-220ENST00000637450 MFSD5Q6N075 450 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 TLK2Q86UE8 772 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 TBC1D10CQ8IV04 446 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 Q9Y3F1 56 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 MCM3APO60318 1980 aa21.74■■□□□ 1.07
CLN6-220ENST00000637450 UNC80Q8N2C7 3258 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 DYNC1LI2O43237 492 aaPredicted RBP21.73■■□□□ 1.07
CLN6-220ENST00000637450 CABYRO75952 493 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 FSCN1Q16658 493 aaKnown RBP21.73■■□□□ 1.07
CLN6-220ENST00000637450 EEPD1Q7L9B9 569 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 FBXO16Q8IX29 292 aaPredicted RBP21.73■■□□□ 1.07
CLN6-220ENST00000637450 FAM126BQ8IXS8 530 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 SLC43A3Q8NBI5 491 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 CDX2Q99626 313 aaPredicted RBP21.73■■□□□ 1.07
CLN6-220ENST00000637450 AP5M1Q9H0R1 490 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 TTYH1Q9H313 450 aaPredicted RBP21.73■■□□□ 1.07
CLN6-220ENST00000637450 RNF41Q9H4P4 317 aaPredicted RBP21.73■■□□□ 1.07
CLN6-220ENST00000637450 VTA1Q9NP79 307 aa21.73■■□□□ 1.07
CLN6-220ENST00000637450 NFIBO00712 420 aa21.72■■□□□ 1.07
CLN6-220ENST00000637450 TLR3O15455 904 aaKnown RBP21.72■■□□□ 1.07
CLN6-220ENST00000637450 CD4P01730 458 aa21.72■■□□□ 1.07
CLN6-220ENST00000637450 SNHG28P0DPA3 235 aa21.72■■□□□ 1.07
CLN6-220ENST00000637450 PTGS1P23219 599 aa21.72■■□□□ 1.07
CLN6-220ENST00000637450 ZNF543Q08ER8 600 aa21.72■■□□□ 1.07
CLN6-220ENST00000637450 CXCL17Q6UXB2 119 aa21.72■■□□□ 1.07
CLN6-220ENST00000637450 YTHDC1Q96MU7 727 aaKnown RBP21.72■■□□□ 1.07
CLN6-220ENST00000637450 ADD3Q9UEY8 706 aaKnown RBP21.72■■□□□ 1.07
CLN6-220ENST00000637450 CDH23Q9H251 3354 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 LOC102724159A0A0B4J2E5 919 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 ZNF213O14771 459 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 PWP2Q15269 919 aaKnown RBP21.71■■□□□ 1.07
CLN6-220ENST00000637450 TMEM63BQ5T3F8 832 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 KIAA1211Q6ZU35 1233 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 C16orf59Q7L2K0 433 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 CLEC4DQ8WXI8 215 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 ESR2Q92731 530 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 PNMA2Q9UL42 364 aa21.71■■□□□ 1.07
CLN6-220ENST00000637450 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.7■■□□□ 1.06
CLN6-220ENST00000637450 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.7■■□□□ 1.06
CLN6-220ENST00000637450 ZEB2O60315 1214 aa21.7■■□□□ 1.06
CLN6-220ENST00000637450 ALDH5A1P51649 535 aaPredicted RBP21.7■■□□□ 1.06
CLN6-220ENST00000637450 PPIGQ13427 754 aaKnown RBP eCLIP21.7■■□□□ 1.067e-7■□□□□ 9.4
CLN6-220ENST00000637450 DGKHQ86XP1 1220 aa21.7■■□□□ 1.06
CLN6-220ENST00000637450 EXOC6Q8TAG9 804 aa21.7■■□□□ 1.06
CLN6-220ENST00000637450 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLN6-220ENST00000637450 SEZ6LQ9BYH1 1024 aa21.7■■□□□ 1.06
CLN6-220ENST00000637450 TMEM265A0A087WTH1 108 aa21.69■■□□□ 1.06
CLN6-220ENST00000637450 PTPDC1A2A3K4 754 aa21.69■■□□□ 1.06
CLN6-220ENST00000637450 CSF2RAP15509 400 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms