RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PCSK9Q8NBP7 692 aaKnown RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 EXOC6Q8TAG9 804 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 TTC14Q96N46 770 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 UPF3AQ9H1J1 476 aaKnown RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 RANBP17Q9H2T7 1088 aaKnown RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 SPC25Q9HBM1 224 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 STARD7Q9NQZ5 370 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 TMEM39AQ9NV64 488 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 CYP39A1Q9NYL5 469 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 CCPG1Q9ULG6 757 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 STXBP5LQ9Y2K9 1186 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 ASTN1O14525 1302 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 ELP1O95163 1332 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 ZMYM6O95789 1325 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 CCDC171Q6TFL3 1326 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.98□□□□□ -0.97
CUX1-219ENST00000606749 CTAGE5O15320 804 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 ICAM1P05362 532 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 ASGR1P07306 291 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 RAG1P15918 1043 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 EPHB4P54760 987 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 MFAP1P55081 439 aaKnown RBP8.98□□□□□ -0.97
CUX1-219ENST00000606749 TNFAIP2Q03169 654 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 SYDE2Q5VT97 1194 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 VTI1AQ96AJ9 217 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 GLT1D1Q96MS3 346 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 PURBQ96QR8 312 aaKnown RBP8.98□□□□□ -0.97
CUX1-219ENST00000606749 GPCPD1Q9NPB8 672 aa8.98□□□□□ -0.97
CUX1-219ENST00000606749 GNEQ9Y223 722 aaKnown RBP8.98□□□□□ -0.97
CUX1-219ENST00000606749 DDX49Q9Y6V7 483 aaKnown RBP8.98□□□□□ -0.97
CUX1-219ENST00000606749 FRMPD2Q68DX3 1309 aaPredicted RBP8.98□□□□□ -0.97
CUX1-219ENST00000606749 LTBP2Q14767 1821 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 ARVCFO00192 962 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 ZNF213O14771 459 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 TIMP1P01033 207 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 PDHBP11177 359 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 SMPD1P17405 629 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 BAATQ14032 418 aaPredicted RBP8.97□□□□□ -0.97
CUX1-219ENST00000606749 IQSEC1Q6DN90 963 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 TAPT1Q6NXT6 567 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 CWC27Q6UX04 472 aaKnown RBP8.97□□□□□ -0.97
CUX1-219ENST00000606749 NSMFQ6X4W1 530 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 NOL8Q76FK4 1167 aaKnown RBP8.97□□□□□ -0.97
CUX1-219ENST00000606749 EEPD1Q7L9B9 569 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 TBC1D10CQ8IV04 446 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 MORC4Q8TE76 937 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 RNF41Q9H4P4 317 aaPredicted RBP8.97□□□□□ -0.97
CUX1-219ENST00000606749 PDGFCQ9NRA1 345 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 MCM3APO60318 1980 aa8.97□□□□□ -0.97
CUX1-219ENST00000606749 A0A0U1RQG5 324 aaPredicted RBP8.96□□□□□ -0.98
CUX1-219ENST00000606749 NFIBO00712 420 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 DYNC1LI2O43237 492 aaPredicted RBP8.96□□□□□ -0.98
CUX1-219ENST00000606749 SNHG28P0DPA3 235 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 PTGS1P23219 599 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 SMAD3P84022 425 aaKnown RBP8.96□□□□□ -0.98
CUX1-219ENST00000606749 BEX3Q00994 111 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 FPGSQ05932 587 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 ZNF543Q08ER8 600 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 TMEM63BQ5T3F8 832 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 DGKHQ86XP1 1220 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 CLEC4DQ8WXI8 215 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 ESR2Q92731 530 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 FAM161BQ96MY7 647 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 GUCD1Q96NT3 240 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 ZKSCAN3Q9BRR0 538 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 SEMA6BQ9H3T3 888 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 TBX21Q9UL17 535 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 Q9Y3F1 56 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 MROH7Q68CQ1 1323 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 A0A0C4DFX4 3053 aa8.96□□□□□ -0.98
CUX1-219ENST00000606749 PTPDC1A2A3K4 754 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 HIP1O00291 1037 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 CABYRO75952 493 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 CD4P01730 458 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 ALDH5A1P51649 535 aaPredicted RBP8.95□□□□□ -0.98
CUX1-219ENST00000606749 FSCN1Q16658 493 aaKnown RBP8.95□□□□□ -0.98
CUX1-219ENST00000606749 ZNF697Q5TEC3 545 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 MFSD5Q6N075 450 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 CXCL17Q6UXB2 119 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 KIAA1211Q6ZU35 1233 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 TLK2Q86UE8 772 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 FBXO16Q8IX29 292 aaPredicted RBP8.95□□□□□ -0.98
CUX1-219ENST00000606749 FAM126BQ8IXS8 530 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 SLC43A3Q8NBI5 491 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 ANKS1AQ92625 1134 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 RNPC3Q96LT9 517 aaKnown RBP8.95□□□□□ -0.98
CUX1-219ENST00000606749 DSCC1Q9BVC3 393 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 UBA5Q9GZZ9 404 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 AP5M1Q9H0R1 490 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 VTA1Q9NP79 307 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 DIAPH3Q9NSV4 1193 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 ZSWIM5Q9P217 1185 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 ADD3Q9UEY8 706 aaKnown RBP8.95□□□□□ -0.98
CUX1-219ENST00000606749 PNMA2Q9UL42 364 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 GRIN2DO15399 1336 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 NEDD4P46934 1319 aa8.95□□□□□ -0.98
CUX1-219ENST00000606749 LOC102724159A0A0B4J2E5 919 aa8.94□□□□□ -0.98
CUX1-219ENST00000606749 RBM47A0AV96 593 aaKnown RBP8.94□□□□□ -0.98
CUX1-219ENST00000606749 DLL1O00548 723 aa8.94□□□□□ -0.98
CUX1-219ENST00000606749 ZEB2O60315 1214 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms