RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SPICE1	Q8N0Z3	855 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	C4orf32	Q8N8J7	132 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	GLIS2	Q9BZE0	524 aa	Predicted RBP	17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	CCDC192	P0DO97	292 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	SYK	P43405	635 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	INF2	Q27J81	1249 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	KRT25	Q7Z3Z0	450 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	CCDC84	Q86UT8	332 aa	Predicted RBP	17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	CSRNP2	Q9H175	543 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	CALCOCO1	Q9P1Z2	691 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	DOCK1	Q14185	1865 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	TMEM232	C9JQI7	657 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	DDN	O94850	711 aa	Predicted RBP	17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	MCM7	P33993	719 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	CDC37	Q16543	378 aa	Predicted RBP	17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	USP49	Q70CQ1	688 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	REXO1	Q8N1G1	1221 aa	Known RBP	17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	TIGD1	Q96MW7	591 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	VCPKMT	Q9H867	229 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	RNF181	Q9P0P0	153 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	SMCHD1	A6NHR9	2005 aa		17.48	■□□□□ 0.39
DDX39A-209	ENST00000589318	CLK2	P49760	499 aa	Known RBP	17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	ADCY7	P51828	1080 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	SYDE2	Q5VT97	1194 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	APOBEC3F	Q8IUX4	373 aa	Known RBP	17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	FERMT2	Q96AC1	680 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	GOPC	Q9HD26	462 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	RIC8A	Q9NPQ8	531 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	TMEM260	Q9NX78	707 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	BIN2	Q9UBW5	565 aa	Predicted RBP	17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	KCNH3	Q9ULD8	1083 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	SLFN14	P0C7P3	912 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	NONO	Q15233	471 aa	Known RBP eCLIP	17.47	■□□□□ 0.39	2e-7	■■■□□ 16.3
DDX39A-209	ENST00000589318	IL17A	Q16552	155 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	ERCC4	Q92889	916 aa	Predicted RBP	17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	ZNF830	Q96NB3	372 aa	Predicted RBP	17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	GGA3	Q9NZ52	723 aa		17.47	■□□□□ 0.39
DDX39A-209	ENST00000589318	MYH7B	A7E2Y1	1941 aa		17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	EDIL3	O43854	480 aa		17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	CTNND1	O60716	968 aa	Known RBP	17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	NCBP1	Q09161	790 aa	Known RBP	17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	FAM83B	Q5T0W9	1011 aa		17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	JAKMIP3	Q5VZ66	844 aa		17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	SDF4	Q9BRK5	362 aa		17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	SSC5D	A1L4H1	1573 aa		17.46	■□□□□ 0.39
DDX39A-209	ENST00000589318	SNAP25	P60880	206 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	TBCK	Q8TEA7	893 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	TMEM60	Q9H2L4	133 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	PRR12	Q9ULL5	1215 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	INPP5B	P32019	993 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	STAT2	P52630	851 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	ZYX	Q15942	572 aa	Known RBP	17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	LONRF3	Q496Y0	759 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	PRAMEF18	Q5VWM3	479 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	ARL6IP4	Q66PJ3	421 aa	Known RBP	17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	KRT222	Q8N1A0	295 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	EPSTI1	Q96J88	318 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	SH2D4A	Q9H788	454 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	GINM1	Q9NU53	330 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	ZNF112	Q9UJU3	913 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	PCDHA1	Q9Y5I3	950 aa		17.45	■□□□□ 0.38
DDX39A-209	ENST00000589318	PHIP	Q8WWQ0	1821 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	VWA3A	A6NCI4	1184 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	IK	Q13123	557 aa	Predicted RBP	17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	TERF2	Q15554	542 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	UBE2S	Q16763	222 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	C9orf131	Q5VYM1	1079 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	NEK8	Q86SG6	692 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	CUL5	Q93034	780 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318	KIAA1468	Q9P260	1216 aa		17.44	■□□□□ 0.38
DDX39A-209	ENST00000589318		A0A087X0B3	334 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	PLA2G6	O60733	806 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	ANO6	Q4KMQ2	910 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	KRBA2	Q6ZNG9	492 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	SYMPK	Q92797	1274 aa	Known RBP	17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	ZNF341	Q9BYN7	854 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	PSTPIP2	Q9H939	334 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318		A0A087WWV3	80 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	POLR2D	O15514	142 aa	Known RBP	17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	LETM2	Q2VYF4	491 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	DCAF15	Q66K64	600 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	AMN	Q9BXJ7	453 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	PPP2R3B	Q9Y5P8	575 aa		17.43	■□□□□ 0.38
DDX39A-209	ENST00000589318	MRPL12	P52815	198 aa	Known RBP	17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	MDM2	Q00987	491 aa	Predicted RBP	17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	FBXO11	Q86XK2	927 aa		17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	ELOA2	Q8IYF1	753 aa	Predicted RBP	17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	KIAA1683	Q9H0B3	1180 aa		17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	ADARB2	Q9NS39	739 aa	Known RBP	17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	FZD1	Q9UP38	647 aa		17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	PITPNM2	Q9BZ72	1349 aa		17.42	■□□□□ 0.38
DDX39A-209	ENST00000589318	MEIS2	O14770	477 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	OPLAH	O14841	1288 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	ACTN4	O43707	911 aa	Known RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	CCNT1	O60563	726 aa	Known RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	TAL1	P17542	331 aa	Predicted RBP	17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	FAM200A	Q8TCP9	573 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	DNAJC25	Q9H1X3	360 aa		17.41	■□□□□ 0.38
DDX39A-209	ENST00000589318	PAPPA2	Q9BXP8	1791 aa		17.41	■□□□□ 0.38

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms