RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CBFA2T2O43439 604 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 NBNO60934 754 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 MYCP01106 439 aaPredicted RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 IGHDP01880 384 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 IL6STP40189 918 aaPredicted RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 CCT4P50991 539 aaKnown RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 EIF6P56537 245 aaKnown RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 CASC1Q6TDU7 716 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 PLBD2Q8NHP8 589 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 FAM163AQ96GL9 167 aaPredicted RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 SCLT1Q96NL6 688 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 MYD88Q99836 296 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 SLC5A4Q9NY91 659 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 MICAL2O94851 1124 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 DDX58O95786 925 aaKnown RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 PCSK2P16519 638 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 ZSCAN20P17040 1043 aaPredicted RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 SCTRP47872 440 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 GDF10P55107 478 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 C8orf34Q49A92 452 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 TBC1D10BQ4KMP7 808 aaPredicted RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 ZNF354CQ86Y25 554 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 SIRT2Q8IXJ6 389 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 VPS37AQ8NEZ2 397 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 JARID2Q92833 1246 aaPredicted RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 METTL22Q9BUU2 404 aaPredicted RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 TARS2Q9BW92 718 aaKnown RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 BRIP1Q9BX63 1249 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 CWC25Q9NXE8 425 aaPredicted RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 NEURL1BA8MQ27 555 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 SEC24BO95487 1268 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 STAU1O95793 577 aaKnown RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 TCIRG1Q13488 830 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 DACT2Q5SW24 774 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 LARP1BQ659C4 914 aaKnown RBP8.1□□□□□ -1.11
VPS53-217ENST00000575100 TBC1D9BQ66K14 1250 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 PPP4R3AQ6IN85 833 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 LHFPL2Q6ZUX7 228 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 SKAP1Q86WV1 359 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 USP33Q8TEY7 942 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 NUDT12Q9BQG2 462 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 HCN4Q9Y3Q4 1203 aa8.1□□□□□ -1.11
VPS53-217ENST00000575100 ADAMTSL1Q8N6G6 1762 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 hCG_1984214I3L0E3 225 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 CLGNO14967 610 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 DDIT3P35638 169 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 FAM160A1Q05DH4 1040 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 CCDC85BQ15834 202 aaPredicted RBP8.09□□□□□ -1.11
VPS53-217ENST00000575100 PPP2R5EQ16537 467 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 LONRF2Q1L5Z9 754 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 TBCELQ5QJ74 424 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 LCE2DQ5TA82 110 aaPredicted RBP8.09□□□□□ -1.11
VPS53-217ENST00000575100 PRR5LQ6MZQ0 368 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 C16orf54Q6UWD8 224 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 ZSCAN30Q86W11 494 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 CLASRPQ8N2M8 674 aaKnown RBP8.09□□□□□ -1.11
VPS53-217ENST00000575100 LINS1Q8NG48 757 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 PI4K2BQ8TCG2 481 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 GJA10Q969M2 543 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 TRIM8Q9BZR9 551 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 SCHIP1Q9P0W5 487 aaPredicted RBP8.09□□□□□ -1.11
VPS53-217ENST00000575100 MAP3K15Q6ZN16 1313 aa8.09□□□□□ -1.11
VPS53-217ENST00000575100 DNAJC25-GNG10A0A024R161 153 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 A0A1W2PRQ8 180 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 CAMTA2O94983 1202 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 RPN1P04843 607 aaKnown RBP8.08□□□□□ -1.12
VPS53-217ENST00000575100 FAM153BP0C7A2 387 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 HSPA1AP0DMV8 641 aaKnown RBP8.08□□□□□ -1.12
VPS53-217ENST00000575100 HSPA1BP0DMV9 641 aaKnown RBP8.08□□□□□ -1.12
VPS53-217ENST00000575100 CPEP16870 476 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 STYK1Q6J9G0 422 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 CFAP161Q6P656 301 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 C3orf58Q8NDZ4 430 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 WDR66Q8TBY9 1149 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 NKD1Q969G9 470 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 KAZALD1Q96I82 304 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 CSRNP2Q9H175 543 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 KIAA1468Q9P260 1216 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 MORC2Q9Y6X9 1032 aaPredicted RBP8.08□□□□□ -1.12
VPS53-217ENST00000575100 MAGEB6P1A0A0J9YX57 407 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 GABRDO14764 452 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 FIBPO43427 364 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 RHOBTB3O94955 611 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 INHAP05111 366 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 GPTP24298 496 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 GCKRQ14397 625 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 KMT5BQ4FZB7 885 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 KIF6Q6ZMV9 814 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 SLC9A9Q8IVB4 645 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 PHC3Q8NDX5 983 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 GPR152Q8TDT2 470 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 NPHS2Q9NP85 383 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 SAGE1Q9NXZ1 904 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 METRNQ9UJH8 293 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 DIS3Q9Y2L1 958 aaKnown RBP8.08□□□□□ -1.12
VPS53-217ENST00000575100 LRRFIP2Q9Y608 721 aaKnown RBP8.08□□□□□ -1.12
VPS53-217ENST00000575100 UBN2Q6ZU65 1347 aa8.08□□□□□ -1.12
VPS53-217ENST00000575100 TTC36A6NLP5 189 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 GPR39O43194 453 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 ORC4O43929 436 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms