RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PPIGQ13427 754 aaKnown RBP eCLIP24.93■■□□□ 1.584e-7■■□□□ 12.8
VPS53-216ENST00000574029 ALX1Q15699 326 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 MUM1L1Q5H9M0 696 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 C16orf59Q7L2K0 433 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 HELLSQ9NRZ9 838 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 CYP39A1Q9NYL5 469 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 TLR3O15455 904 aaKnown RBP24.92■■□□□ 1.58
VPS53-216ENST00000574029 RANBP6O60518 1105 aaKnown RBP24.92■■□□□ 1.58
VPS53-216ENST00000574029 CD4P01730 458 aa24.92■■□□□ 1.58
VPS53-216ENST00000574029 DNAJB2P25686 324 aa24.92■■□□□ 1.58
VPS53-216ENST00000574029 ANKRD45Q5TZF3 282 aa24.92■■□□□ 1.58
VPS53-216ENST00000574029 SLC43A3Q8NBI5 491 aa24.92■■□□□ 1.58
VPS53-216ENST00000574029 FOSL2P15408 326 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 SMPD1P17405 629 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 TMEM240Q5SV17 173 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 RASIP1Q5U651 963 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 NOL8Q76FK4 1167 aaKnown RBP24.91■■□□□ 1.58
VPS53-216ENST00000574029 TLK2Q86UE8 772 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 TMEM199Q8N511 208 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 DCAF4Q8WV16 495 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 RANBP17Q9H2T7 1088 aaKnown RBP24.91■■□□□ 1.58
VPS53-216ENST00000574029 ZBTB47Q9UFB7 747 aaPredicted RBP24.91■■□□□ 1.58
VPS53-216ENST00000574029 CCPG1Q9ULG6 757 aa24.91■■□□□ 1.58
VPS53-216ENST00000574029 CABYRO75952 493 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 ICAM1P05362 532 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 CSF2RAP15509 400 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 RRP1P56182 461 aaKnown RBP24.9■■□□□ 1.58
VPS53-216ENST00000574029 IQSEC1Q6DN90 963 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 TAPT1Q6NXT6 567 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 CXCL17Q6UXB2 119 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 BTNL9Q6UXG8 535 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 MORC4Q8TE76 937 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 PDGFCQ9NRA1 345 aa24.9■■□□□ 1.58
VPS53-216ENST00000574029 DDX49Q9Y6V7 483 aaKnown RBP24.9■■□□□ 1.58
VPS53-216ENST00000574029 PDE1AP54750 535 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 GRIN2CQ14957 1233 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 FSCN1Q16658 493 aaKnown RBP24.89■■□□□ 1.58
VPS53-216ENST00000574029 CCDC96Q2M329 555 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 TICAM2Q86XR7 235 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 PPP1R12CQ9BZL4 782 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 AP5M1Q9H0R1 490 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 MTMR7Q9Y216 660 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 Q9Y3F1 56 aa24.89■■□□□ 1.58
VPS53-216ENST00000574029 CDH23Q9H251 3354 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 EYSQ5T1H1 3165 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 FGAP02671 866 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 TTBK2Q6IQ55 1244 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 NSMFQ6X4W1 530 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 FBXO16Q8IX29 292 aaPredicted RBP24.88■■□□□ 1.57
VPS53-216ENST00000574029 VTA1Q9NP79 307 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 TCP11L1Q9NUJ3 509 aa24.88■■□□□ 1.57
VPS53-216ENST00000574029 GRIN2DO15399 1336 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 DYNC1LI2O43237 492 aaPredicted RBP24.87■■□□□ 1.57
VPS53-216ENST00000574029 TOP1P11387 765 aaKnown RBP24.87■■□□□ 1.57
VPS53-216ENST00000574029 PTGS1P23219 599 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 ITGA7Q13683 1181 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 MCMDC2Q4G0Z9 681 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 PSRC1Q6PGN9 363 aaPredicted RBP24.87■■□□□ 1.57
VPS53-216ENST00000574029 EEPD1Q7L9B9 569 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 TIFAQ96CG3 184 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 FAM227BQ96M60 508 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 PURBQ96QR8 312 aaKnown RBP24.87■■□□□ 1.57
VPS53-216ENST00000574029 TMEM47Q9BQJ4 181 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 SEZ6LQ9BYH1 1024 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 ZNF576Q9H609 170 aa24.87■■□□□ 1.57
VPS53-216ENST00000574029 ZMYM6O95789 1325 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 A0A0D9SFI3 127 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 ZEB2O60315 1214 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 ACRP10323 421 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 SLC16A2P36021 539 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 HDAC1Q13547 482 aaPredicted RBP24.86■■□□□ 1.57
VPS53-216ENST00000574029 TMEM63BQ5T3F8 832 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 SYDE2Q5VT97 1194 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 ZNF365Q70YC5 407 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 CRBNQ96SW2 442 aa24.86■■□□□ 1.57
VPS53-216ENST00000574029 CYP2C18P33260 490 aa24.85■■□□□ 1.57
VPS53-216ENST00000574029 BAATQ14032 418 aaPredicted RBP24.85■■□□□ 1.57
VPS53-216ENST00000574029 IL23AQ9NPF7 189 aa24.85■■□□□ 1.57
VPS53-216ENST00000574029 TOMM22Q9NS69 142 aa24.85■■□□□ 1.57
VPS53-216ENST00000574029 ADD3Q9UEY8 706 aaKnown RBP24.85■■□□□ 1.57
VPS53-216ENST00000574029 LOC102724159A0A0B4J2E5 919 aa24.84■■□□□ 1.57
VPS53-216ENST00000574029 GRXCR1A8MXD5 290 aa24.84■■□□□ 1.57
VPS53-216ENST00000574029 HSPD1P10809 573 aaKnown RBP24.84■■□□□ 1.57
VPS53-216ENST00000574029 PWP2Q15269 919 aaKnown RBP24.84■■□□□ 1.57
VPS53-216ENST00000574029 RRP12Q5JTH9 1297 aaKnown RBP24.84■■□□□ 1.57
VPS53-216ENST00000574029 KIAA1211Q6ZU35 1233 aa24.84■■□□□ 1.57
VPS53-216ENST00000574029 PBX4Q9BYU1 374 aa24.84■■□□□ 1.57
VPS53-216ENST00000574029 HIPK3Q9H422 1215 aa24.84■■□□□ 1.57
VPS53-216ENST00000574029 FRMPD2Q68DX3 1309 aaPredicted RBP24.84■■□□□ 1.57
VPS53-216ENST00000574029 NFIBO00712 420 aa24.83■■□□□ 1.57
VPS53-216ENST00000574029 PBX2P40425 430 aa24.83■■□□□ 1.57
VPS53-216ENST00000574029 ALDH5A1P51649 535 aaPredicted RBP24.83■■□□□ 1.57
VPS53-216ENST00000574029 DUSP28Q4G0W2 176 aa24.83■■□□□ 1.57
VPS53-216ENST00000574029 HERVK_113Q902F9 699 aa24.83■■□□□ 1.57
VPS53-216ENST00000574029 GPCPD1Q9NPB8 672 aa24.83■■□□□ 1.57
VPS53-216ENST00000574029 UMODL1Q5DID0 1318 aa24.83■■□□□ 1.56
VPS53-216ENST00000574029 PDHBP11177 359 aa24.82■■□□□ 1.56
VPS53-216ENST00000574029 NMIQ13287 307 aaPredicted RBP24.82■■□□□ 1.56
VPS53-216ENST00000574029 ZNF589Q86UQ0 364 aaPredicted RBP24.82■■□□□ 1.56
VPS53-216ENST00000574029 TTC14Q96N46 770 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms