RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 ICAM1P05362 532 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 SNHG28P0DPA3 235 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 CST5P28325 142 aaPredicted RBP21.36■■□□□ 1.01
CHD3-214ENST00000572579 GJA9P57773 515 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 NKX3-2P78367 333 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 FAAP100Q0VG06 881 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 SYDE2Q5VT97 1194 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 MFSD6Q6ZSS7 791 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 ZKSCAN3Q9BRR0 538 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 CCPG1Q9ULG6 757 aa21.36■■□□□ 1.01
CHD3-214ENST00000572579 GNEQ9Y223 722 aaKnown RBP21.36■■□□□ 1.01
CHD3-214ENST00000572579 KIAA0355O15063 1070 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 PQBP1O60828 265 aaKnown RBP21.35■■□□□ 1.01
CHD3-214ENST00000572579 CDK7P50613 346 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 TAPT1Q6NXT6 567 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 ANKRD33Q7Z3H0 272 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 CLEC4DQ8WXI8 215 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 MTMR10Q9NXD2 777 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 PRKAG2Q9UGJ0 569 aa21.35■■□□□ 1.01
CHD3-214ENST00000572579 NFIBO00712 420 aa21.34■■□□□ 1.01
CHD3-214ENST00000572579 CLTBP09497 229 aa21.34■■□□□ 1.01
CHD3-214ENST00000572579 ZNF543Q08ER8 600 aa21.34■■□□□ 1.01
CHD3-214ENST00000572579 BAATQ14032 418 aaPredicted RBP21.34■■□□□ 1.01
CHD3-214ENST00000572579 TTC14Q96N46 770 aa21.34■■□□□ 1.01
CHD3-214ENST00000572579 CPVLQ9H3G5 476 aa21.34■■□□□ 1.01
CHD3-214ENST00000572579 STARD7Q9NQZ5 370 aa21.34■■□□□ 1.01
CHD3-214ENST00000572579 MOXD2PA6NHM9 499 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 ASGR1P07306 291 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 C6orf222P0C671 652 aaPredicted RBP21.33■■□□□ 1.01
CHD3-214ENST00000572579 GSPT1P15170 499 aaKnown RBP21.33■■□□□ 1.01
CHD3-214ENST00000572579 SMPD1P17405 629 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 BEX3Q00994 111 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 NSMFQ6X4W1 530 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 EEPD1Q7L9B9 569 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 MORC4Q8TE76 937 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 TOX2Q96NM4 488 aa21.33■■□□□ 1.01
CHD3-214ENST00000572579 ZNF213O14771 459 aa21.32■■□□□ 1
CHD3-214ENST00000572579 GOLGA8HP0CJ92 632 aa21.32■■□□□ 1
CHD3-214ENST00000572579 PCP11498 1178 aaKnown RBP21.32■■□□□ 1
CHD3-214ENST00000572579 GNASQ5JWF2 1037 aa21.32■■□□□ 1
CHD3-214ENST00000572579 FBXO16Q8IX29 292 aaPredicted RBP21.32■■□□□ 1
CHD3-214ENST00000572579 ANKS1AQ92625 1134 aa21.32■■□□□ 1
CHD3-214ENST00000572579 LTBP2Q14767 1821 aa21.32■■□□□ 1
CHD3-214ENST00000572579 ASB14A6NK59 587 aa21.31■■□□□ 1
CHD3-214ENST00000572579 KDM4AO75164 1064 aa21.31■■□□□ 1
CHD3-214ENST00000572579 IRX6P78412 446 aaPredicted RBP21.31■■□□□ 1
CHD3-214ENST00000572579 TNFAIP2Q03169 654 aa21.31■■□□□ 1
CHD3-214ENST00000572579 DGKHQ86XP1 1220 aa21.31■■□□□ 1
CHD3-214ENST00000572579 NUP133Q8WUM0 1156 aa21.31■■□□□ 1
CHD3-214ENST00000572579 UBA5Q9GZZ9 404 aa21.31■■□□□ 1
CHD3-214ENST00000572579 DIAPH3Q9NSV4 1193 aa21.31■■□□□ 1
CHD3-214ENST00000572579 GRIN2DO15399 1336 aa21.3■■□□□ 1
CHD3-214ENST00000572579 ELP1O95163 1332 aa21.3■■□□□ 1
CHD3-214ENST00000572579 MCM3APO60318 1980 aa21.3■■□□□ 1
CHD3-214ENST00000572579 SLC30A10Q6XR72 485 aa21.3■■□□□ 1
CHD3-214ENST00000572579 ESR2Q92731 530 aa21.3■■□□□ 1
CHD3-214ENST00000572579 DSCC1Q9BVC3 393 aa21.3■■□□□ 1
CHD3-214ENST00000572579 RNF41Q9H4P4 317 aaPredicted RBP21.3■■□□□ 1
CHD3-214ENST00000572579 TMEM39AQ9NV64 488 aa21.3■■□□□ 1
CHD3-214ENST00000572579 ZSWIM5Q9P217 1185 aa21.3■■□□□ 1
CHD3-214ENST00000572579 TBX21Q9UL17 535 aa21.3■■□□□ 1
CHD3-214ENST00000572579 B4E1Z4 1266 aa21.29■■□□□ 1
CHD3-214ENST00000572579 MFAP1P55081 439 aaKnown RBP21.29■■□□□ 1
CHD3-214ENST00000572579 GUCD1Q96NT3 240 aa21.29■■□□□ 1
CHD3-214ENST00000572579 CDH23Q9H251 3354 aa21.28■■□□□ 1
CHD3-214ENST00000572579 ARVCFO00192 962 aa21.28■■□□□ 1
CHD3-214ENST00000572579 DYNC1LI2O43237 492 aaPredicted RBP21.28■■□□□ 1
CHD3-214ENST00000572579 CXCL17Q6UXB2 119 aa21.28■■□□□ 1
CHD3-214ENST00000572579 C16orf59Q7L2K0 433 aa21.28■■□□□ 1
CHD3-214ENST00000572579 ENAHQ8N8S7 591 aaPredicted RBP21.28■■□□□ 1
CHD3-214ENST00000572579 SLC43A3Q8NBI5 491 aa21.28■■□□□ 1
CHD3-214ENST00000572579 PCSK9Q8NBP7 692 aaKnown RBP21.28■■□□□ 1
CHD3-214ENST00000572579 TBC1D5Q92609 795 aa21.28■■□□□ 1
CHD3-214ENST00000572579 GLT1D1Q96MS3 346 aa21.28■■□□□ 1
CHD3-214ENST00000572579 RAG1P15918 1043 aa21.27■■□□□ 1
CHD3-214ENST00000572579 ALDH5A1P51649 535 aaPredicted RBP21.27■■□□□ 1
CHD3-214ENST00000572579 TTC22Q5TAA0 569 aa21.27■■□□□ 1
CHD3-214ENST00000572579 IQSEC1Q6DN90 963 aa21.27■■□□□ 1
CHD3-214ENST00000572579 FAM109BQ6ICB4 259 aaPredicted RBP21.27■■□□□ 1
CHD3-214ENST00000572579 NOL8Q76FK4 1167 aaKnown RBP21.27■■□□□ 1
CHD3-214ENST00000572579 TLK2Q86UE8 772 aa21.27■■□□□ 1
CHD3-214ENST00000572579 FAM126BQ8IXS8 530 aa21.27■■□□□ 1
CHD3-214ENST00000572579 ZSCAN10Q96SZ4 725 aaPredicted RBP21.27■■□□□ 1
CHD3-214ENST00000572579 DCDC2CA8MYV0 355 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 HIP1O00291 1037 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 TIMP1P01033 207 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 CD4P01730 458 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 RPS6P62753 249 aaKnown RBP21.26■□□□□ 0.99
CHD3-214ENST00000572579 FSCN1Q16658 493 aaKnown RBP21.26■□□□□ 0.99
CHD3-214ENST00000572579 PNMA1Q8ND90 353 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 FAM161BQ96MY7 647 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 SPC25Q9HBM1 224 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 STXBP5LQ9Y2K9 1186 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 TAF6LQ9Y6J9 622 aa21.26■□□□□ 0.99
CHD3-214ENST00000572579 LCTP09848 1927 aa21.25■□□□□ 0.99
CHD3-214ENST00000572579 A0A0U1RQG5 324 aaPredicted RBP21.25■□□□□ 0.99
CHD3-214ENST00000572579 RBM47A0AV96 593 aaKnown RBP21.25■□□□□ 0.99
CHD3-214ENST00000572579 PTPDC1A2A3K4 754 aa21.25■□□□□ 0.99
CHD3-214ENST00000572579 CALML3P27482 149 aa21.25■□□□□ 0.99
CHD3-214ENST00000572579 KIAA1211Q6ZU35 1233 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms