RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 SLC26A6Q9BXS9 759 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 ASCC2Q9H1I8 757 aaPredicted RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 RANBP17Q9H2T7 1088 aaKnown RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 JMJD4Q9H9V9 463 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 NPDC1Q9NQX5 325 aaPredicted RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 ADAMTS5Q9UNA0 930 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 hCG_1984214I3L0E3 225 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 ZBTB5O15062 677 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 PRPF3O43395 683 aaKnown RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 FDPSP14324 419 aaKnown RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 HSPA6P17066 643 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 INHBEP58166 350 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 C1QTNF8P60827 252 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 COG2Q14746 738 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 PFKFB3Q16875 520 aaPredicted RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 FAM43AQ8N2R8 423 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 ZNF713Q8N859 430 aaPredicted RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 ATG4CQ96DT6 458 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 IPO9Q96P70 1041 aaKnown RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 PIGSQ96S52 555 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 PTPN18Q99952 460 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 SLC38A10Q9HBR0 1119 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 ORC3Q9UBD5 711 aaPredicted RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 SEC63Q9UGP8 760 aaKnown RBP12.07□□□□□ -0.48
CDH3-210ENST00000569117 SMC3Q9UQE7 1217 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 KIF3AQ9Y496 699 aa12.07□□□□□ -0.48
CDH3-210ENST00000569117 PNMA6FA0A0J9YX94 578 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 PDHXO00330 501 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 IGF2BP3O00425 579 aaKnown RBP eCLIP12.06□□□□□ -0.48
CDH3-210ENST00000569117 PPFIA3O75145 1194 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 SCG2P13521 617 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 GJB2P29033 226 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 HERVK_113P62684 666 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 AKAP17AQ02040 695 aaKnown RBP12.06□□□□□ -0.48
CDH3-210ENST00000569117 PKN1Q16512 942 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 QRICH1Q2TAL8 776 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 HOMER1Q86YM7 354 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 MB21D1Q8N884 522 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 REPS2Q8NFH8 660 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 GTF3C2Q8WUA4 911 aaPredicted RBP12.06□□□□□ -0.48
CDH3-210ENST00000569117 WASF1Q92558 559 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 DDX11Q96FC9 970 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 PHOX2BQ99453 314 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 PARK7Q99497 189 aaKnown RBP12.06□□□□□ -0.48
CDH3-210ENST00000569117 CDHR5Q9HBB8 845 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 HOXC10Q9NYD6 342 aa12.06□□□□□ -0.48
CDH3-210ENST00000569117 V9GY48 417 aaPredicted RBP12.06□□□□□ -0.48
CDH3-210ENST00000569117 hCG_1642624A0A1W2PR95 340 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 VWA5AO00534 786 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 ATP2A1O14983 1001 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 PPP1R11O60927 126 aaPredicted RBP12.05□□□□□ -0.48
CDH3-210ENST00000569117 DTNBO60941 627 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 ICAM1P05362 532 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 TM4SF4P48230 202 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 OAZ1P54368 228 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 KIF23Q02241 960 aaPredicted RBP12.05□□□□□ -0.48
CDH3-210ENST00000569117 GRM1Q13255 1194 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 PPP1R18Q6NYC8 613 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 FAM177A1Q8N128 213 aaPredicted RBP12.05□□□□□ -0.48
CDH3-210ENST00000569117 PIBF1Q8WXW3 757 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 VAT1LQ9HCJ6 419 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 PNMA2Q9UL42 364 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 ZNF214Q9UL59 606 aaPredicted RBP12.05□□□□□ -0.48
CDH3-210ENST00000569117 ZNF536O15090 1300 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 ADGRA2Q96PE1 1338 aa12.05□□□□□ -0.48
CDH3-210ENST00000569117 WDR33Q9C0J8 1336 aaKnown RBP12.05□□□□□ -0.48
CDH3-210ENST00000569117 SMCHD1A6NHR9 2005 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 ATMINO43313 823 aaPredicted RBP12.04□□□□□ -0.48
CDH3-210ENST00000569117 ZBED4O75132 1171 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 CYP2C8P10632 490 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 MAP2K2P36507 400 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 SLC4A3P48751 1232 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 VEGFBP49765 207 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 HTRA3P83110 453 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 TRAF1Q13077 416 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 WWC2Q6AWC2 1192 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 OTUD7BQ6GQQ9 843 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 FAM184AQ8NB25 1140 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 RGS22Q8NE09 1264 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 SMCR8Q8TEV9 937 aaPredicted RBP12.04□□□□□ -0.48
CDH3-210ENST00000569117 GPKOWQ92917 476 aaPredicted RBP eCLIP12.04□□□□□ -0.48
CDH3-210ENST00000569117 ZIC5Q96T25 663 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 P2RX7Q99572 595 aaKnown RBP12.04□□□□□ -0.48
CDH3-210ENST00000569117 ALG1Q9BT22 464 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 BEGAINQ9BUH8 593 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 AMNQ9BXJ7 453 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 BARHL2Q9NY43 387 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 ZNF236Q9UL36 1845 aa12.04□□□□□ -0.48
CDH3-210ENST00000569117 PLXNB2O15031 1838 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 STXBP3O00186 592 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 AOC2O75106 756 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 PDCP20941 246 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 DDIT3P35638 169 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 GCLCP48506 637 aaPredicted RBP12.03□□□□□ -0.48
CDH3-210ENST00000569117 SNAP25P60880 206 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 CCDC174Q6PII3 467 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 POTEEQ6S8J3 1075 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 HEATR3Q7Z4Q2 680 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 FBXO11Q86XK2 927 aa12.03□□□□□ -0.48
CDH3-210ENST00000569117 CCDC148Q8NFR7 591 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms