RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 CXCL17Q6UXB2 119 aa18.4■□□□□ 0.54
NME3-211ENST00000568561 C16orf59Q7L2K0 433 aa18.4■□□□□ 0.54
NME3-211ENST00000568561 EEPD1Q7L9B9 569 aa18.4■□□□□ 0.54
NME3-211ENST00000568561 FBXO16Q8IX29 292 aaPredicted RBP18.4■□□□□ 0.54
NME3-211ENST00000568561 FAM126BQ8IXS8 530 aa18.4■□□□□ 0.54
NME3-211ENST00000568561 PURBQ96QR8 312 aaKnown RBP18.4■□□□□ 0.54
NME3-211ENST00000568561 PRR12Q9ULL5 1215 aa18.4■□□□□ 0.54
NME3-211ENST00000568561 SALL3Q9BXA9 1300 aa18.4■□□□□ 0.54
NME3-211ENST00000568561 GRXCR1A8MXD5 290 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 RANBP6O60518 1105 aaKnown RBP18.39■□□□□ 0.53
NME3-211ENST00000568561 FDX1P10109 184 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 CCDC96Q2M329 555 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 TMEM63BQ5T3F8 832 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 TLK2Q86UE8 772 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 PDGFCQ9NRA1 345 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 CHD9Q3L8U1 2897 aa18.39■□□□□ 0.53
NME3-211ENST00000568561 TMEM265A0A087WTH1 108 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.38■□□□□ 0.53
NME3-211ENST00000568561 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.38■□□□□ 0.53
NME3-211ENST00000568561 CYP2C18P33260 490 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 PBX2P40425 430 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 PPIGQ13427 754 aaKnown RBP eCLIP18.38■□□□□ 0.531e-15■□□□□ 10.6
NME3-211ENST00000568561 TMEM240Q5SV17 173 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 RCSD1Q6JBY9 416 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 NSMFQ6X4W1 530 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 TIFAQ96CG3 184 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 CYP39A1Q9NYL5 469 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 CCPG1Q9ULG6 757 aa18.38■□□□□ 0.53
NME3-211ENST00000568561 GNEQ9Y223 722 aaKnown RBP18.38■□□□□ 0.53
NME3-211ENST00000568561 ASB14A6NK59 587 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 TLR3O15455 904 aaKnown RBP18.37■□□□□ 0.53
NME3-211ENST00000568561 SMPD1P17405 629 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 SLC16A2P36021 539 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 TKFCQ3LXA3 575 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 TTBK2Q6IQ55 1244 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 ZNF365Q70YC5 407 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 USP38Q8NB14 1042 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 TOMM22Q9NS69 142 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 UMODL1Q5DID0 1318 aa18.37■□□□□ 0.53
NME3-211ENST00000568561 DYNC1LI2O43237 492 aaPredicted RBP18.36■□□□□ 0.53
NME3-211ENST00000568561 CD4P01730 458 aa18.36■□□□□ 0.53
NME3-211ENST00000568561 PSMC6P62333 389 aa18.36■□□□□ 0.53
NME3-211ENST00000568561 FSCN1Q16658 493 aaKnown RBP18.36■□□□□ 0.53
NME3-211ENST00000568561 RRP12Q5JTH9 1297 aaKnown RBP18.36■□□□□ 0.53
NME3-211ENST00000568561 FRMPD2Q68DX3 1309 aaPredicted RBP18.36■□□□□ 0.53
NME3-211ENST00000568561 TMEM199Q8N511 208 aa18.36■□□□□ 0.53
NME3-211ENST00000568561 AP5M1Q9H0R1 490 aa18.36■□□□□ 0.53
NME3-211ENST00000568561 ZNF576Q9H609 170 aa18.36■□□□□ 0.53
NME3-211ENST00000568561 GRIN2DO15399 1336 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 PLA2G6O60733 806 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 NKX3-2P78367 333 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 PPP4R3BQ5MIZ7 849 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 ANKRD45Q5TZF3 282 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 RASIP1Q5U651 963 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 TAPT1Q6NXT6 567 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 FAM227BQ96M60 508 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 PBX4Q9BYU1 374 aa18.35■□□□□ 0.53
NME3-211ENST00000568561 A0A0D9SFI3 127 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 ORC4O43929 436 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 ICAM1P05362 532 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 ITGA7Q13683 1181 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 PSRC1Q6PGN9 363 aaPredicted RBP18.34■□□□□ 0.53
NME3-211ENST00000568561 DCAF4Q8WV16 495 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 TRPV6Q9H1D0 765 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 HIPK3Q9H422 1215 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 GPCPD1Q9NPB8 672 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 CXXC1Q9P0U4 656 aaPredicted RBP18.34■□□□□ 0.53
NME3-211ENST00000568561 ANAPC4Q9UJX5 808 aa18.34■□□□□ 0.53
NME3-211ENST00000568561 NFIBO00712 420 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 CCL23P55773 120 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 RRP1P56182 461 aaKnown RBP18.33■□□□□ 0.52
NME3-211ENST00000568561 BAATQ14032 418 aaPredicted RBP18.33■□□□□ 0.52
NME3-211ENST00000568561 SLC43A3Q8NBI5 491 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 EVI5LQ96CN4 794 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 CRBNQ96SW2 442 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 TMEM47Q9BQJ4 181 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 RANBP17Q9H2T7 1088 aaKnown RBP18.33■□□□□ 0.52
NME3-211ENST00000568561 IL23AQ9NPF7 189 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 PRDM6Q9NQX0 595 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 ZBTB47Q9UFB7 747 aaPredicted RBP18.33■□□□□ 0.52
NME3-211ENST00000568561 SCN5AQ14524 2016 aa18.33■□□□□ 0.52
NME3-211ENST00000568561 NOVP48745 357 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 HAND2P61296 217 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 SYDE2Q5VT97 1194 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 SLC30A10Q6XR72 485 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 KIAA1211Q6ZU35 1233 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 PPM1EQ8WY54 764 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 PRDM12Q9H4Q4 367 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 VTA1Q9NP79 307 aa18.32■□□□□ 0.52
NME3-211ENST00000568561 PTPDC1A2A3K4 754 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 B4GALT4O60513 344 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 CABYRO75952 493 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 FGAP02671 866 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 ALDH5A1P51649 535 aaPredicted RBP18.31■□□□□ 0.52
NME3-211ENST00000568561 PDE1AP54750 535 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 NMIQ13287 307 aaPredicted RBP18.31■□□□□ 0.52
NME3-211ENST00000568561 IQSEC1Q6DN90 963 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 OTOP2Q7RTS6 562 aa18.31■□□□□ 0.52
NME3-211ENST00000568561 ZNF589Q86UQ0 364 aaPredicted RBP18.31■□□□□ 0.52
NME3-211ENST00000568561 NOC4LQ9BVI4 516 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms