RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TNFAIP2Q03169 654 aa20.21■□□□□ 0.83
CLN3-216ENST00000565316 FPGSQ05932 587 aa20.21■□□□□ 0.83
CLN3-216ENST00000565316 ZNF697Q5TEC3 545 aa20.21■□□□□ 0.83
CLN3-216ENST00000565316 MORC4Q8TE76 937 aa20.21■□□□□ 0.83
CLN3-216ENST00000565316 LNPKQ9C0E8 428 aa20.21■□□□□ 0.83
CLN3-216ENST00000565316 GNEQ9Y223 722 aaKnown RBP20.21■□□□□ 0.83
CLN3-216ENST00000565316 A0A0U1RQG5 324 aaPredicted RBP20.2■□□□□ 0.82
CLN3-216ENST00000565316 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.2■□□□□ 0.82
CLN3-216ENST00000565316 ARVCFO00192 962 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 TIMP1P01033 207 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 CCDC96Q2M329 555 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 TTBK2Q6IQ55 1244 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 SEMA6BQ9H3T3 888 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 CCPG1Q9ULG6 757 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 CCDC171Q6TFL3 1326 aa20.2■□□□□ 0.82
CLN3-216ENST00000565316 DLL1O00548 723 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 PCP11498 1178 aaKnown RBP20.19■□□□□ 0.82
CLN3-216ENST00000565316 RRP12Q5JTH9 1297 aaKnown RBP20.19■□□□□ 0.82
CLN3-216ENST00000565316 SYDE2Q5VT97 1194 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 TAPT1Q6NXT6 567 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 RNPC3Q96LT9 517 aaKnown RBP20.19■□□□□ 0.82
CLN3-216ENST00000565316 FAM161BQ96MY7 647 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 RWDD1Q9H446 243 aaPredicted RBP20.19■□□□□ 0.82
CLN3-216ENST00000565316 OSBPL3Q9H4L5 887 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 TOMM22Q9NS69 142 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 MTMR7Q9Y216 660 aa20.19■□□□□ 0.82
CLN3-216ENST00000565316 TRIM6-TRIM34B2RNG4 842 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 SLC16A2P36021 539 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 AKNAD1Q5T1N1 836 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 IQSEC1Q6DN90 963 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 MFSD5Q6N075 450 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 SLC43A3Q8NBI5 491 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 TTC14Q96N46 770 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 DDX49Q9Y6V7 483 aaKnown RBP20.18■□□□□ 0.82
CLN3-216ENST00000565316 UNC80Q8N2C7 3258 aa20.18■□□□□ 0.82
CLN3-216ENST00000565316 PDHBP11177 359 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 SMPD1P17405 629 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 SDSP20132 328 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 HAND2P61296 217 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 BEX3Q00994 111 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 NSMFQ6X4W1 530 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 MFSD6Q6ZSS7 791 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 TLK2Q86UE8 772 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 CHD1LQ86WJ1 897 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 PLEKHM2Q8IWE5 1019 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 FAM126BQ8IXS8 530 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 VTI1AQ96AJ9 217 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 CDX2Q99626 313 aaPredicted RBP20.17■□□□□ 0.82
CLN3-216ENST00000565316 TTYH1Q9H313 450 aaPredicted RBP20.17■□□□□ 0.82
CLN3-216ENST00000565316 VTA1Q9NP79 307 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 Q9Y3F1 56 aa20.17■□□□□ 0.82
CLN3-216ENST00000565316 LOC102724159A0A0B4J2E5 919 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 CABYRO75952 493 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 CD4P01730 458 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 SNHG28P0DPA3 235 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 MFAP1P55081 439 aaKnown RBP20.16■□□□□ 0.82
CLN3-216ENST00000565316 NUCB1Q02818 461 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 PWP2Q15269 919 aaKnown RBP20.16■□□□□ 0.82
CLN3-216ENST00000565316 FSCN1Q16658 493 aaKnown RBP20.16■□□□□ 0.82
CLN3-216ENST00000565316 NOL8Q76FK4 1167 aaKnown RBP20.16■□□□□ 0.82
CLN3-216ENST00000565316 TBC1D10CQ8IV04 446 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 RILPL2Q969X0 211 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 GPCPD1Q9NPB8 672 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 PDGFCQ9NRA1 345 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 LRRC37A2A6NM11 1700 aa20.16■□□□□ 0.82
CLN3-216ENST00000565316 TMEM265A0A087WTH1 108 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 IGHDP01880 384 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 ZNF543Q08ER8 600 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 BAATQ14032 418 aaPredicted RBP20.15■□□□□ 0.82
CLN3-216ENST00000565316 B4GALNT3Q6L9W6 998 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 C16orf59Q7L2K0 433 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 FBXO16Q8IX29 292 aaPredicted RBP20.15■□□□□ 0.82
CLN3-216ENST00000565316 PURBQ96QR8 312 aaKnown RBP20.15■□□□□ 0.82
CLN3-216ENST00000565316 AP5M1Q9H0R1 490 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 RNF41Q9H4P4 317 aaPredicted RBP20.15■□□□□ 0.82
CLN3-216ENST00000565316 ADD3Q9UEY8 706 aaKnown RBP20.15■□□□□ 0.82
CLN3-216ENST00000565316 PNMA2Q9UL42 364 aa20.15■□□□□ 0.82
CLN3-216ENST00000565316 FRMPD2Q68DX3 1309 aaPredicted RBP20.15■□□□□ 0.82
CLN3-216ENST00000565316 NFIBO00712 420 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 DYNC1LI2O43237 492 aaPredicted RBP20.14■□□□□ 0.81
CLN3-216ENST00000565316 PTGS1P23219 599 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 NT5C2P49902 561 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 PPIGQ13427 754 aaKnown RBP eCLIP20.14■□□□□ 0.816e-7■■□□□ 11.8
CLN3-216ENST00000565316 TMEM63BQ5T3F8 832 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 CXCL17Q6UXB2 119 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 CLEC4DQ8WXI8 215 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 SEZ6LQ9BYH1 1024 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 LCTP09848 1927 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 GRIN2DO15399 1336 aa20.14■□□□□ 0.81
CLN3-216ENST00000565316 TLR3O15455 904 aaKnown RBP20.13■□□□□ 0.81
CLN3-216ENST00000565316 ZEB2O60315 1214 aa20.13■□□□□ 0.81
CLN3-216ENST00000565316 RASIP1Q5U651 963 aa20.13■□□□□ 0.81
CLN3-216ENST00000565316 EEPD1Q7L9B9 569 aa20.13■□□□□ 0.81
CLN3-216ENST00000565316 ESR2Q92731 530 aa20.13■□□□□ 0.81
CLN3-216ENST00000565316 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.13■□□□□ 0.813e-6■□□□□ 10.1
CLN3-216ENST00000565316 WDR19Q8NEZ3 1342 aa20.13■□□□□ 0.81
CLN3-216ENST00000565316 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.12■□□□□ 0.81
CLN3-216ENST00000565316 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.12■□□□□ 0.81
CLN3-216ENST00000565316 RBM47A0AV96 593 aaKnown RBP20.12■□□□□ 0.81
CLN3-216ENST00000565316 NEDD4P46934 1319 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms