RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TTBK2Q6IQ55 1244 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 MORC4Q8TE76 937 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 CHMP4CQ96CF2 233 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 SPC25Q9HBM1 224 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 MTMR10Q9NXD2 777 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 CCPG1Q9ULG6 757 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 LOC102724159A0A0B4J2E5 919 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 ITGB8P26012 769 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 CDK7P50613 346 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 SNAP25P60880 206 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 ZNF543Q08ER8 600 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 PWP2Q15269 919 aaKnown RBP20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 DGKHQ86XP1 1220 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 ESR2Q92731 530 aa20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 GNEQ9Y223 722 aaKnown RBP20.27■□□□□ 0.84
VPS9D1-203ENST00000563798 MCM3APO60318 1980 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 ZNF213O14771 459 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 ASGR1P07306 291 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 C6orf222P0C671 652 aaPredicted RBP20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 SLC16A2P36021 539 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 FAAP100Q0VG06 881 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 SHHQ15465 462 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 GLT1D1Q96MS3 346 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 DSCC1Q9BVC3 393 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 DIAPH3Q9NSV4 1193 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 MTMR7Q9Y216 660 aa20.26■□□□□ 0.83
VPS9D1-203ENST00000563798 DCDC2CA8MYV0 355 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 PQBP1O60828 265 aaKnown RBP20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 TNFAIP2Q03169 654 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 CCDC178Q5BJE1 867 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 CWC27Q6UX04 472 aaKnown RBP20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 Q7L0L9 218 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 ANKS1AQ92625 1134 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 STXBP5LQ9Y2K9 1186 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 Q9Y3F1 56 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 NEDD4P46934 1319 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 MROH7Q68CQ1 1323 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 WDR19Q8NEZ3 1342 aa20.25■□□□□ 0.83
VPS9D1-203ENST00000563798 IRX5P78411 483 aaPredicted RBP20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 GNASQ5JWF2 1037 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 C9orf50Q5SZB4 431 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 IQSEC1Q6DN90 963 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 TAPT1Q6NXT6 567 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 GPCPD1Q9NPB8 672 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 TMEM39AQ9NV64 488 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 LRRC37A2A6NM11 1700 aa20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 FRMPD2Q68DX3 1309 aaPredicted RBP20.24■□□□□ 0.83
VPS9D1-203ENST00000563798 LAMA4Q16363 1823 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 ARVCFO00192 962 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 RAG1P15918 1043 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 GPATCH4Q5T3I0 446 aaKnown RBP20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 NSMFQ6X4W1 530 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 CLEC4DQ8WXI8 215 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 MAF1Q9H063 256 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 VTA1Q9NP79 307 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 ADD3Q9UEY8 706 aaKnown RBP20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 TBX21Q9UL17 535 aa20.23■□□□□ 0.83
VPS9D1-203ENST00000563798 COL6A3P12111 3177 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 LCTP09848 1927 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 A0A0U1RQG5 324 aaPredicted RBP20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 NFIBO00712 420 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 CABYRO75952 493 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 SMPD1P17405 629 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 BAATQ14032 418 aaPredicted RBP20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 SLC43A3Q8NBI5 491 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 CTNNA3Q9UI47 895 aa20.22■□□□□ 0.83
VPS9D1-203ENST00000563798 LAMA2P24043 3122 aaKnown RBP20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 TIMP1P01033 207 aa20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 SMAD3P84022 425 aaKnown RBP20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 TLK2Q86UE8 772 aa20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 IQCA1Q86XH1 822 aa20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 RGS22Q8NE09 1264 aa20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 SEZ6LQ9BYH1 1024 aa20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 PDGFCQ9NRA1 345 aa20.21■□□□□ 0.83
VPS9D1-203ENST00000563798 RBM47A0AV96 593 aaKnown RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 KDM4AO75164 1064 aa20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 ALDH5A1P51649 535 aaPredicted RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 EPHB4P54760 987 aa20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 FPGSQ05932 587 aa20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 FSCN1Q16658 493 aaKnown RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 IMMTQ16891 758 aaKnown RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 FAM126BQ8IXS8 530 aa20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 PURBQ96QR8 312 aaKnown RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 SUPT16HQ9Y5B9 1047 aaKnown RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 DDX49Q9Y6V7 483 aaKnown RBP20.2■□□□□ 0.82
VPS9D1-203ENST00000563798 PDE4AP27815 886 aa20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 DUSP28Q4G0W2 176 aa20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 FBXO16Q8IX29 292 aaPredicted RBP20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 PNMA1Q8ND90 353 aa20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 ZSCAN10Q96SZ4 725 aaPredicted RBP20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 ZKSCAN3Q9BRR0 538 aa20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 AP5M1Q9H0R1 490 aa20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 ZSWIM5Q9P217 1185 aa20.19■□□□□ 0.82
VPS9D1-203ENST00000563798 B4E1Z4 1266 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 DYNC1LI2O43237 492 aaPredicted RBP20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 CD4P01730 458 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 EDNRBP24530 442 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 BEX3Q00994 111 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 TTC22Q5TAA0 569 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms