RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	ZNF451	Q9Y4E5	1061 aa		5.7	□□□□□ -1.5
LRRC28-222	ENST00000561431	MAGI3	Q5TCQ9	1506 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	LRRIQ1	Q96JM4	1722 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	SSU72P8	A0A1W2PR75	194 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	PRR33	A8MZF0	331 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	ZSCAN22	P10073	491 aa	Predicted RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	CD247	P20963	164 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	ZNF143	P52747	638 aa	Predicted RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	PPP2R5D	Q14738	602 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	IFI16	Q16666	785 aa	Known RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	AOC3	Q16853	763 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	CWF19L1	Q69YN2	538 aa	Known RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	SLC23A3	Q6PIS1	610 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	DHX37	Q8IY37	1157 aa	Known RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	DTWD2	Q8NBA8	298 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	ST13P5	Q8NFI4	369 aa	Predicted RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	HEXIM2	Q96MH2	286 aa	Known RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	IPO9	Q96P70	1041 aa	Known RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	PRDM14	Q9GZV8	571 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	GP6	Q9HCN6	339 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	GFOD1	Q9NXC2	390 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	WHRN	Q9P202	907 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	MSRB2	Q9Y3D2	182 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	HECW1	Q76N89	1606 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	TEX14	Q8IWB6	1497 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	KDM2B	Q8NHM5	1336 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	CNTNAP4	Q9C0A0	1308 aa		5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	CDK13	Q14004	1512 aa	Known RBP	5.69	□□□□□ -1.5
LRRC28-222	ENST00000561431	CLSTN1	O94985	981 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	NMI	Q13287	307 aa	Predicted RBP	5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	KCNMB1	Q16558	191 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	ANKRD39	Q53RE8	183 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	KRTAP5-3	Q6L8H2	238 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	POMZP3	Q6PJE2	187 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	LRRC47	Q8N1G4	583 aa	Known RBP	5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	PIWIL2	Q8TC59	973 aa	Known RBP	5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	HRASLS5	Q96KN8	279 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	ZDHHC15	Q96MV8	337 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	PPP1R16B	Q96T49	567 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	TRIT1	Q9H3H1	467 aa	Known RBP	5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	NOL6	Q9H6R4	1146 aa	Known RBP	5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	RAPGEFL1	Q9UHV5	662 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	AKT3	Q9Y243	479 aa		5.68	□□□□□ -1.5
LRRC28-222	ENST00000561431	PCF11	O94913	1555 aa	Known RBP	5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	TLDC2	A0PJX2	215 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	CBFA2T2	O43439	604 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	TNK2	Q07912	1038 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	SNW1	Q13573	536 aa	Known RBP	5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	SLC10A6	Q3KNW5	377 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	ANGEL2	Q5VTE6	544 aa	Known RBP	5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	SPATC1	Q76KD6	591 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	TMC3	Q7Z5M5	1100 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	FIBCD1	Q8N539	461 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	LIN37	Q96GY3	246 aa	Predicted RBP	5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	CDC6	Q99741	560 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	KLHL25	Q9H0H3	589 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	MKNK2	Q9HBH9	465 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	PRDM7	Q9NQW5	492 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	CHST7	Q9NS84	486 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	ZSWIM5	Q9P217	1185 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	ZMYM5	Q9UJ78	669 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	PLAGL2	Q9UPG8	496 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	SF3B6	Q9Y3B4	125 aa	Known RBP	5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	MRPL42	Q9Y6G3	142 aa	Known RBP	5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	CAPN6	Q9Y6Q1	641 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	TTC37	Q6PGP7	1564 aa		5.67	□□□□□ -1.5
LRRC28-222	ENST00000561431	FMN1	Q68DA7	1419 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	CD109	Q6YHK3	1445 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431		H3BS24	57 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	DIAPH1	O60610	1272 aa	Known RBP	5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	KCNH1	O95259	989 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	PRAMEF1	O95521	474 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	KRT1	P04264	644 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	CEACAM5	P06731	702 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	OXCT1	P55809	520 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	ZNF445	P59923	1031 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	SYDE1	Q6ZW31	735 aa	Predicted RBP	5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	FAM214B	Q7L5A3	538 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	ANKLE2	Q86XL3	938 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	BVES	Q8NE79	360 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	SH3TC2	Q8TF17	1288 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	VWCE	Q96DN2	955 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431		Q96M66	194 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	HSPA12B	Q96MM6	686 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	POLR3GL	Q9BT43	218 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	SPATA9	Q9BWV2	254 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	APEX2	Q9UBZ4	518 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	DIS3	Q9Y2L1	958 aa	Known RBP	5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	FHOD1	Q9Y613	1164 aa		5.66	□□□□□ -1.5
LRRC28-222	ENST00000561431	FRMPD1	Q5SYB0	1578 aa		5.65	□□□□□ -1.5
LRRC28-222	ENST00000561431	TMEM265	A0A087WTH1	108 aa		5.65	□□□□□ -1.5
LRRC28-222	ENST00000561431		A0A087WZG4	1122 aa		5.65	□□□□□ -1.5
LRRC28-222	ENST00000561431	SIGLEC6	O43699	453 aa		5.65	□□□□□ -1.5
LRRC28-222	ENST00000561431	ITGAV	P06756	1048 aa		5.65	□□□□□ -1.5
LRRC28-222	ENST00000561431	LTK	P29376	864 aa		5.65	□□□□□ -1.5
LRRC28-222	ENST00000561431	HSP90AA2P	Q14568	343 aa	Predicted RBP	5.65	□□□□□ -1.5

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