RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SLC39A2Q9NP94 309 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 PDS5AQ29RF7 1337 aaKnown RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 USP17L5A8MUK1 530 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 PSMA7O14818 248 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 ZMYND10O75800 440 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 TXKP42681 527 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 SPTY2D1Q68D10 685 aaPredicted RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 CEP112Q8N8E3 955 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 ANKS1AQ92625 1134 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 GDAP1L1Q96MZ0 367 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 MYO6Q9UM54 1294 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 RTCBQ9Y3I0 505 aaKnown RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 COL22A1Q8NFW1 1626 aaPredicted RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 TRIM21P19474 475 aaKnown RBP14.44□□□□□ -0.1
LDLR-207ENST00000558013 KRT26Q7Z3Y9 468 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 GLIS3Q8NEA6 775 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 TBCKQ8TEA7 893 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 ZNF185O15231 689 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 PHACTR2O75167 634 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 HNRNPH2P55795 449 aaKnown RBP14.44□□□□□ -0.1
LDLR-207ENST00000558013 GPSM2P81274 684 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 TBC1D8BQ0IIM8 1120 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 CCDC122Q5T0U0 273 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 DYMQ7RTS9 669 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 WDR66Q8TBY9 1149 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 COA7Q96BR5 231 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 PCMTD1Q96MG8 357 aaPredicted RBP14.44□□□□□ -0.1
LDLR-207ENST00000558013 MMS19Q96T76 1030 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 DNAJC7Q99615 494 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 CCSER1Q9C0I3 900 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 COL5A3P25940 1745 aaPredicted RBP14.44□□□□□ -0.1
LDLR-207ENST00000558013 CTAGE15A4D2H0 777 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 MAP2K7O14733 419 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 EPHB6O15197 1021 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 OR52Z1P0C646 297 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 CTAGE8P0CG41 777 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 ATP2B2Q01814 1243 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 CTAGE6Q86UF2 777 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 CTAGE4Q8IX94 777 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 KIAA0895Q8NCT3 520 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 SMCR8Q8TEV9 937 aaPredicted RBP14.44□□□□□ -0.1
LDLR-207ENST00000558013 NUDT12Q9BQG2 462 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 PYM1Q9BRP8 204 aaKnown RBP14.44□□□□□ -0.1
LDLR-207ENST00000558013 ZMYND12Q9H0C1 365 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 CAPN11Q9UMQ6 739 aa14.44□□□□□ -0.1
LDLR-207ENST00000558013 BAG3O95817 575 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 KCNB1Q14721 858 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 CCDC148Q8NFR7 591 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 CNOT6LQ96LI5 555 aaKnown RBP14.43□□□□□ -0.1
LDLR-207ENST00000558013 TCP11L1Q9NUJ3 509 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 TEX11Q8IYF3 940 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 SEMA6BQ9H3T3 888 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 MAGEC2Q9UBF1 373 aaPredicted RBP14.43□□□□□ -0.1
LDLR-207ENST00000558013 L1RE1Q9UN81 338 aa14.43□□□□□ -0.1
LDLR-207ENST00000558013 MACROD2A1Z1Q3 448 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 EDIL3O43854 480 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 EEF1GP26641 437 aaKnown RBP14.42□□□□□ -0.1
LDLR-207ENST00000558013 GNAQP50148 359 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 BRD3Q15059 726 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 MIIPQ5JXC2 388 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 MSANTD4Q8NCY6 345 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 P2RX5Q93086 422 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 NGLY1Q96IV0 654 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 TTYH3Q9C0H2 523 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 THAP9Q9H5L6 903 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 RAB21Q9UL25 225 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 LAMB1P07942 1786 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 POTEMA6NI47 508 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 ATP8B1O43520 1251 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 SLC37A4O43826 429 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 UFL1O94874 794 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 TDP2O95551 362 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 SRGNP10124 158 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 RFC4P35249 363 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 MRPS25P82663 173 aaKnown RBP14.42□□□□□ -0.1
LDLR-207ENST00000558013 GRAPQ13588 217 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 TRIM14Q14142 442 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 NONOQ15233 471 aaKnown RBP eCLIP14.42□□□□□ -0.15e-7■□□□□ 10.7
LDLR-207ENST00000558013 LRRC47Q8N1G4 583 aaKnown RBP14.42□□□□□ -0.1
LDLR-207ENST00000558013 DAGLBQ8NCG7 672 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 GRAPLQ8TC17 118 aaPredicted RBP14.42□□□□□ -0.1
LDLR-207ENST00000558013 EXOC1Q9NV70 894 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 ADAM21Q9UKJ8 722 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 NRAPQ86VF7 1730 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 SNED1Q8TER0 1413 aa14.42□□□□□ -0.1
LDLR-207ENST00000558013 ZNF263O14978 683 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 MTIF2P46199 727 aaKnown RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 PICALMQ13492 652 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 STIM1Q13586 685 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 AMOTL1Q8IY63 956 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 CCDC155Q8N6L0 562 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 NHEJ1Q9H9Q4 299 aaPredicted RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 CD209Q9NNX6 404 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 F8W031 263 aaPredicted RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 LRRC41Q15345 812 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 NEK8Q86SG6 692 aa14.41□□□□□ -0.1
LDLR-207ENST00000558013 NOC4LQ9BVI4 516 aaKnown RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 FAM207AQ9NSI2 230 aaPredicted RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 TNRC6CQ9HCJ0 1690 aaKnown RBP14.41□□□□□ -0.1
LDLR-207ENST00000558013 LRRIQ3A6PVS8 624 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms