RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TNFAIP2Q03169 654 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 ITGA7Q13683 1181 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 FSCN1Q16658 493 aaKnown RBP9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 TMEM63BQ5T3F8 832 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 FAM133AQ8N9E0 248 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 CHST13Q8NET6 341 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 CEP95Q96GE4 821 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 SCLYQ96I15 445 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 TRPV6Q9H1D0 765 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 EPB41L4AQ9HCS5 686 aaPredicted RBP9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 A1CFQ9NQ94 594 aaKnown RBP9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 CLIP2Q9UDT6 1046 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 FBXO40Q9UH90 709 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 PLIN4Q96Q06 1357 aa9.77□□□□□ -0.84
CCDC88C-214ENST00000557507 EPOPA6NHQ4 379 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 ZBBXA8MT70 800 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 GSG1L2A8MUP6 293 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 RFXAPO00287 272 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 PRDM1O75626 825 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 SMPD1P17405 629 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 HOXD11P31277 338 aaPredicted RBP9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 OAZ1P54368 228 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 TTLL4Q14679 1199 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 SBK1Q52WX2 424 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 KRT40Q6A162 431 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 NOL8Q76FK4 1167 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 FBXO16Q8IX29 292 aaPredicted RBP9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 AGBL1Q96MI9 1066 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 STRBPQ96SI9 672 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 ACAD9Q9H845 621 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 MKNK2Q9HBH9 465 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 PDGFCQ9NRA1 345 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 RNF146Q9NTX7 359 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 FEM1BQ9UK73 627 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 CTDP1Q9Y5B0 961 aaPredicted RBP9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 PCDHA11Q9Y5I1 949 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 SLC4A7Q9Y6M7 1214 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 ZNF318Q5VUA4 2279 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 ZNF536O15090 1300 aa9.77□□□□□ -0.85
CCDC88C-214ENST00000557507 MINDY4BA8MYZ0 360 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 ERC2O15083 957 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 CABYRO75952 493 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 ARHGEF15O94989 841 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 NEFLP07196 543 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 CA3P07451 260 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 ATP2A2P16615 1042 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 RASGRP2Q7LDG7 609 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 GMCL1P1Q8NEA9 526 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 C1QTNF1Q9BXJ1 281 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 TSPYL2Q9H2G4 693 aaPredicted RBP9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 EPHX3Q9H6B9 360 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 CERS4Q9HA82 394 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 TRMT13Q9NUP7 481 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 MTMR4Q9NYA4 1195 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 MTCH2Q9Y6C9 303 aa9.76□□□□□ -0.85
CCDC88C-214ENST00000557507 DYNC1LI2O43237 492 aaPredicted RBP9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 CYP2C9P11712 490 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 SKIV2LQ15477 1246 aaKnown RBP9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 SLFN13Q68D06 897 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 TAPT1Q6NXT6 567 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 EEPD1Q7L9B9 569 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 SPRED2Q7Z698 418 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 KHSRPQ92945 711 aaKnown RBP eCLIP9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 MKL1Q969V6 931 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 CHMP4CQ96CF2 233 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 PURBQ96QR8 312 aaKnown RBP9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 LRFN3Q9BTN0 628 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 AP5M1Q9H0R1 490 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 ALDH8A1Q9H2A2 487 aaPredicted RBP9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 COG6Q9Y2V7 657 aa9.75□□□□□ -0.85
CCDC88C-214ENST00000557507 ASB14A6NK59 587 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 TMEM232C9JQI7 657 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 M0R2C6 588 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 RAB11FIP3O75154 756 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 HMMRO75330 724 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 TTLL1O95922 423 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 BMP3P12645 472 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 POU3F3P20264 500 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 STAT2P52630 851 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 SNAP25P60880 206 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 AAK1Q2M2I8 961 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 MUM1L1Q5H9M0 696 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 TMEM67Q5HYA8 995 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 ZSCAN25Q6NSZ9 544 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 DEFB128Q7Z7B8 93 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 RPAP2Q8IXW5 612 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 RPUSD2Q8IZ73 545 aaKnown RBP9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 PPP1R13LQ8WUF5 828 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 OSBP2Q969R2 916 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 ISY1Q9ULR0 285 aaKnown RBP9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 SYNPO2Q9UMS6 1093 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 GTF3C3Q9Y5Q9 886 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 TNKSO95271 1327 aa9.74□□□□□ -0.85
CCDC88C-214ENST00000557507 RALGAPA2Q2PPJ7 1873 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 DOCK5Q9H7D0 1870 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 GPAA1O43292 621 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 TLL1O43897 1013 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 SMARCA5O60264 1052 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 ZEB2O60315 1214 aa9.73□□□□□ -0.85
CCDC88C-214ENST00000557507 PFKMP08237 780 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms