RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 C16orf59Q7L2K0 433 aa21.68■■□□□ 1.06
VIPAS39-209ENST00000556909 PRR12Q9ULL5 1215 aa21.68■■□□□ 1.06
VIPAS39-209ENST00000556909 GNEQ9Y223 722 aaKnown RBP21.68■■□□□ 1.06
VIPAS39-209ENST00000556909 DDX49Q9Y6V7 483 aaKnown RBP21.68■■□□□ 1.06
VIPAS39-209ENST00000556909 MYO9BQ13459 2157 aa21.68■■□□□ 1.06
VIPAS39-209ENST00000556909 TLR3O15455 904 aaKnown RBP21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 CSF2RAP15509 400 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 GRIN2CQ14957 1233 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 MUM1L1Q5H9M0 696 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 TMEM240Q5SV17 173 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 RCSD1Q6JBY9 416 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 NOL8Q76FK4 1167 aaKnown RBP21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 TLK2Q86UE8 772 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 PPP1R12CQ9BZL4 782 aa21.67■■□□□ 1.06
VIPAS39-209ENST00000556909 CHD9Q3L8U1 2897 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 CD4P01730 458 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 PTGS1P23219 599 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 RASIP1Q5U651 963 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 VPS53Q5VIR6 699 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 CXCL17Q6UXB2 119 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 TMEM199Q8N511 208 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 TIFAQ96CG3 184 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 CYP39A1Q9NYL5 469 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 ANAPC4Q9UJX5 808 aa21.66■■□□□ 1.06
VIPAS39-209ENST00000556909 TTC28Q96AY4 2481 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 RANBP6O60518 1105 aaKnown RBP21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 SMPD1P17405 629 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 NOVP48745 357 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 FSCN1Q16658 493 aaKnown RBP21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 PSRC1Q6PGN9 363 aaPredicted RBP21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 FBXO16Q8IX29 292 aaPredicted RBP21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 SLC43A3Q8NBI5 491 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 ZNF576Q9H609 170 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 CCPG1Q9ULG6 757 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 MTMR7Q9Y216 660 aa21.65■■□□□ 1.06
VIPAS39-209ENST00000556909 ORC4O43929 436 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 ACRP10323 421 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 CYP2C18P33260 490 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 CCDC96Q2M329 555 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 DCAF4Q8WV16 495 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 AP5M1Q9H0R1 490 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 PDGFCQ9NRA1 345 aa21.64■■□□□ 1.05
VIPAS39-209ENST00000556909 GRXCR1A8MXD5 290 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 CABYRO75952 493 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 ICAM1P05362 532 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 PBX2P40425 430 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 TAPT1Q6NXT6 567 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 ZNF365Q70YC5 407 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 EEPD1Q7L9B9 569 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 PBX4Q9BYU1 374 aa21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 RANBP17Q9H2T7 1088 aaKnown RBP21.63■■□□□ 1.05
VIPAS39-209ENST00000556909 GRIN2DO15399 1336 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 DYNC1LI2O43237 492 aaPredicted RBP21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 FGRP09769 529 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 ITGA7Q13683 1181 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 TMEM63BQ5T3F8 832 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 NSMFQ6X4W1 530 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 USP38Q8NB14 1042 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 EVI5LQ96CN4 794 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 PURBQ96QR8 312 aaKnown RBP21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 VTA1Q9NP79 307 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 IL23AQ9NPF7 189 aa21.62■■□□□ 1.05
VIPAS39-209ENST00000556909 UMODL1Q5DID0 1318 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 ALX1Q15699 326 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 IQSEC1Q6DN90 963 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 TTBK2Q6IQ55 1244 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 MORC4Q8TE76 937 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 HIPK3Q9H422 1215 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 HELLSQ9NRZ9 838 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 Q9Y3F1 56 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 LAMA4Q16363 1823 aa21.61■■□□□ 1.05
VIPAS39-209ENST00000556909 ZEB2O60315 1214 aa21.6■■□□□ 1.05
VIPAS39-209ENST00000556909 SLC16A2P36021 539 aa21.6■■□□□ 1.05
VIPAS39-209ENST00000556909 ANKRD45Q5TZF3 282 aa21.6■■□□□ 1.05
VIPAS39-209ENST00000556909 BTNL9Q6UXG8 535 aa21.6■■□□□ 1.05
VIPAS39-209ENST00000556909 CHD7Q9P2D1 2997 aa21.6■■□□□ 1.05
VIPAS39-209ENST00000556909 FRMPD2Q68DX3 1309 aaPredicted RBP21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 MUC3AQ02505 3323 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 A0A0D9SFI3 127 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 NFIBO00712 420 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 B4GALT4O60513 344 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 PDE1AP54750 535 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 PSMC6P62333 389 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 BAATQ14032 418 aaPredicted RBP21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 RRP12Q5JTH9 1297 aaKnown RBP21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 SYDE2Q5VT97 1194 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 HERVK_113Q902F9 699 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 FAM227BQ96M60 508 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 TMEM47Q9BQJ4 181 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 NOC4LQ9BVI4 516 aaKnown RBP21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 SEZ6LQ9BYH1 1024 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 TRPV6Q9H1D0 765 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 TOMM22Q9NS69 142 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 CXXC1Q9P0U4 656 aaPredicted RBP21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 ZBTB47Q9UFB7 747 aaPredicted RBP21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 SCN10AQ9Y5Y9 1956 aa21.59■■□□□ 1.05
VIPAS39-209ENST00000556909 SCN5AQ14524 2016 aa21.58■■□□□ 1.05
VIPAS39-209ENST00000556909 FGAP02671 866 aa21.58■■□□□ 1.05
VIPAS39-209ENST00000556909 TOP1P11387 765 aaKnown RBP21.58■■□□□ 1.05
VIPAS39-209ENST00000556909 ALDH5A1P51649 535 aaPredicted RBP21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms