RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 RARBP10826 455 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 CYBAP13498 195 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 RFC5P40937 340 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 CLK2P49760 499 aaKnown RBP8.61□□□□□ -1.03
SCFD1-222ENST00000556768 IRX6P78412 446 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-222ENST00000556768 CCDC96Q2M329 555 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 KCTD1Q719H9 257 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 RETREG2Q8NC44 543 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 DIS3LQ8TF46 1054 aaKnown RBP8.61□□□□□ -1.03
SCFD1-222ENST00000556768 DCAF4Q8WV16 495 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 CHMP4CQ96CF2 233 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 INCENPQ9NQS7 918 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 IL17RBQ9NRM6 502 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 HOMER2Q9NSB8 354 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 PRKAG2Q9UGJ0 569 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 COLQQ9Y215 455 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-222ENST00000556768 NAV1Q8NEY1 1877 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 LAMA3Q16787 3333 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 NMT2O60551 498 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 TRDNQ13061 729 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 ZNF792Q3KQV3 632 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 TKFCQ3LXA3 575 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 RNF180Q86T96 592 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 C7orf61Q8IZ16 206 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 REPS2Q8NFH8 660 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 DSCC1Q9BVC3 393 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 ACAD9Q9H845 621 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 CNNM2Q9H8M5 875 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 SPC25Q9HBM1 224 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 ZSWIM8A7E2V4 1837 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 CDK5RAP2Q96SN8 1893 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 AKR1A1P14550 325 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 TSR1Q2NL82 804 aaKnown RBP8.6□□□□□ -1.03
SCFD1-222ENST00000556768 PRAMEF19Q5SWL8 479 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 TMEM47Q9BQJ4 181 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 KRT23Q9C075 422 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 FAM184BQ9ULE4 1060 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 RIPK3Q9Y572 518 aa8.6□□□□□ -1.03
SCFD1-222ENST00000556768 DDX60LQ5H9U9 1706 aaKnown RBP8.6□□□□□ -1.03
SCFD1-222ENST00000556768 LAMA2P24043 3122 aaKnown RBP8.6□□□□□ -1.03
SCFD1-222ENST00000556768 POTEB2H3BUK9 544 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 SLC34A2O95436 690 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 OATP04181 439 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 ALAS1P13196 640 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 GPATCH4Q5T3I0 446 aaKnown RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 GJC2Q5T442 439 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 ANO1Q5XXA6 986 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 CCDC174Q6PII3 467 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 DGKHQ86XP1 1220 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 TRERF1Q96PN7 1200 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 LBHD1Q9BQE6 289 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 UBAC1Q9BSL1 405 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 ABHD16BQ9H3Z7 469 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 KAT14Q9H8E8 782 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 XPNPEP3Q9NQH7 507 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 CCPG1Q9ULG6 757 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 PRR12Q9ULL5 1215 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 PFASO15067 1338 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 SYNGAP1Q96PV0 1343 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 A0A1W2PPC1 479 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 ASB14A6NK59 587 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 ATMINO43313 823 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 COL6A1P12109 1028 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 NOVP48745 357 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 TTC22Q5TAA0 569 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 MAMDC4Q6UXC1 1216 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 TRPV1Q8NER1 839 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 NLRP7Q8WX94 980 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 AGBL1Q96MI9 1066 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 MPHOSPH6Q99547 160 aaKnown RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 RNF146Q9NTX7 359 aa8.59□□□□□ -1.03
SCFD1-222ENST00000556768 RBM27Q9P2N5 1060 aaKnown RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 ZHX1Q9UKY1 873 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-222ENST00000556768 SZT2Q5T011 3432 aa8.59□□□□□ -1.04
SCFD1-222ENST00000556768 DNAJC25-GNG10A0A024R161 153 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 KDM4AO75164 1064 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 IGHA2P01877 340 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 ICAM1P05362 532 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 ACVR2BQ13705 512 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 SYDE2Q5VT97 1194 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 KIAA1211Q6ZU35 1233 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 NOL8Q76FK4 1167 aaKnown RBP8.58□□□□□ -1.04
SCFD1-222ENST00000556768 NUP133Q8WUM0 1156 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 ZSCAN10Q96SZ4 725 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-222ENST00000556768 ADD3Q9UEY8 706 aaKnown RBP8.58□□□□□ -1.04
SCFD1-222ENST00000556768 ZMYND8Q9ULU4 1186 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-222ENST00000556768 PCDHGA10Q9Y5H3 936 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 RAD50Q92878 1312 aa8.58□□□□□ -1.04
SCFD1-222ENST00000556768 RBBP6Q7Z6E9 1792 aaKnown RBP8.58□□□□□ -1.04
SCFD1-222ENST00000556768 ERICH2A1L162 156 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 B4DLN1 442 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 PDHBP11177 359 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 SLC16A2P36021 539 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 ADCYAP1R1P41586 468 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 MRPL12P52815 198 aaKnown RBP8.57□□□□□ -1.04
SCFD1-222ENST00000556768 SART3Q15020 963 aaKnown RBP8.57□□□□□ -1.04
SCFD1-222ENST00000556768 LRRC41Q15345 812 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 TMEM259Q4ZIN3 620 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 PPP2R2DQ66LE6 453 aa8.57□□□□□ -1.04
SCFD1-222ENST00000556768 ASTLQ6HA08 431 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms