RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CAPZA3Q96KX2 299 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 GDAP1L1Q96MZ0 367 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 MRPL44Q9H9J2 332 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ZNF277Q9NRM2 450 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 HOMER2Q9NSB8 354 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 FAM207AQ9NSI2 230 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 FZD1Q9UP38 647 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 BCS1LQ9Y276 419 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 COL14A1Q05707 1796 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 UBR2Q8IWV8 1755 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 SLU7O95391 586 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 GH2P01242 217 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 OR52Z1P0C646 297 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 EEF2P13639 858 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 CDC25BP30305 580 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 CERKLQ49MI3 558 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 SLFN13Q68D06 897 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 RAD9BQ6WBX8 426 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 NEK8Q86SG6 692 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 CPXCR1Q8N123 301 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 TC2NQ8N9U0 490 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 TBC1D5Q92609 795 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 OSBPL5Q9H0X9 879 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 BCAS3Q9H6U6 928 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 BARHL2Q9NY43 387 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 MTMR4Q9NYA4 1195 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 ZBTB21Q9ULJ3 1066 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 ATF5Q9Y2D1 282 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PCDHA1Q9Y5I3 950 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 COL16A1Q07092 1604 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PALM3A6NDB9 673 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 E9PMD0 336 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 GTPBP6O43824 516 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 CFBP00751 764 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 RHOXF2BP0C7M4 288 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 SRGNP10124 158 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 TRIM21P19474 475 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 GNA11P29992 359 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 MATR3P43243 847 aaKnown RBP eCLIP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 ADCY7P51828 1080 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 COPB1P53618 953 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 APBA1Q02410 837 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 TSR1Q2NL82 804 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PRR16Q569H4 304 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 DNAAF5Q86Y56 855 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 SLF2Q8IX21 1173 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 NLGN1Q8N2Q7 840 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 TNFRSF25Q93038 417 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 CALML4Q96GE6 196 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 RHOXF2Q9BQY4 288 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 NLRC4Q9NPP4 1024 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 DISC1Q9NRI5 854 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 MKRN1Q9UHC7 482 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 RBAK-RBAKDNI3L0D1 243 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 ECE2O60344 883 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 CLSTN1O94985 981 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PLCG2P16885 1265 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 RNASE9P60153 205 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 ETF1P62495 437 aaKnown RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 TBC1D8BQ0IIM8 1120 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 DGKZQ13574 1117 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PPP2R5BQ15173 497 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 C16orf86Q6ZW13 317 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 KCNK18Q7Z418 384 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 SMCR8Q8TEV9 937 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 KIFC2Q96AC6 838 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PRMT6Q96LA8 375 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PSTPIP2Q9H939 334 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 ATP6V0A2Q9Y487 856 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 PAXBP1Q9Y5B6 917 aa6.28□□□□□ -1.4
LIMA1-215ENST00000552823 MYH3P11055 1940 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 PCNTO95613 3336 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 MACROD2A1Z1Q3 448 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 ECE1P42892 770 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 PPP4CP60510 307 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 SP4Q02446 784 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 STIM1Q13586 685 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 NAALADL2Q58DX5 795 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 NCAPH2Q6IBW4 605 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 LARGE2Q8N3Y3 721 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 CYP2W1Q8TAV3 490 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 TBC1D22AQ8WUA7 517 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 JMJD4Q9H9V9 463 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 IMPACTQ9P2X3 320 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 KIAA1024Q9UPX6 916 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 CICQ96RK0 1608 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-215ENST00000552823 SHTN1A0MZ66 631 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 ERICH4A6NGS2 130 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 ZBTB7AO95365 584 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 SARSP49591 514 aaKnown RBP6.27□□□□□ -1.41
LIMA1-215ENST00000552823 ICA1Q05084 483 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 SYCP1Q15431 976 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 QRICH1Q2TAL8 776 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 APOBEC3HQ6NTF7 200 aaKnown RBP6.27□□□□□ -1.41
LIMA1-215ENST00000552823 PDXDC2PQ6P474 469 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 FBXO38Q6PIJ6 1188 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 KRT26Q7Z3Y9 468 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 SP8Q8IXZ3 490 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF579Q8NAF0 562 aaKnown RBP6.27□□□□□ -1.41
LIMA1-215ENST00000552823 ACER1Q8TDN7 264 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms