RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 SEC62Q99442 399 aaKnown RBP6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 SLC30A3Q99726 388 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 BPIFA3Q9BQP9 254 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 ISCA1Q9BUE6 129 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 TEX13AQ9BXU3 409 aaPredicted RBP6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 LIN7BQ9HAP6 207 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 LATS2Q9NRM7 1088 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 KCND1Q9NSA2 647 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 CLIP2Q9UDT6 1046 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 SALL1Q9NSC2 1324 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 ADAMTSL3P82987 1691 aa6.93□□□□□ -1.3
CHMP4A-210ENST00000552620 RGPD5Q99666 1765 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 A0A1B0GUL7 405 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 SMTNL1A8MU46 457 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 KIF2AO00139 706 aaPredicted RBP6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 NRLP54845 237 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 FCGRTP55899 365 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 GSDMDP57764 484 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 TPM4P67936 248 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 APOBRQ0VD83 1088 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 TCIRG1Q13488 830 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 SNW1Q13573 536 aaKnown RBP6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PCSK7Q16549 785 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 IMMTQ16891 758 aaKnown RBP6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 CCDC57Q2TAC2 916 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 BRAPQ7Z569 592 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 RAB44Q7Z6P3 723 aaPredicted RBP6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 CEP57L1Q8IYX8 460 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PDCL2Q8N4E4 241 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 KCNG4Q8TDN1 519 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 ANKRD7Q92527 254 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 ZNF512BQ96KM6 892 aaPredicted RBP6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 USP28Q96RU2 1077 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 OSMRQ99650 979 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 OXCT2Q9BYC2 517 aaPredicted RBP6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 CAPN10Q9HC96 672 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 IMPACTQ9P2X3 320 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PRR12Q9ULL5 1215 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PPM1HQ9ULR3 514 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 MAST3O60307 1309 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PCDH11XQ9BZA7 1347 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PCDH11YQ9BZA8 1340 aa6.92□□□□□ -1.3
CHMP4A-210ENST00000552620 PKD1L3Q7Z443 1732 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 LAMB4A4D0S4 1761 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 ARFGEF2Q9Y6D5 1785 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TMEM238LA0A1B0GVL6 79 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 CDC14CA4D256 554 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 DTNBO60941 627 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 PCCAP05165 728 aaPredicted RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 CSF1RP07333 972 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TNNT1P13805 278 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 ME1P48163 572 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 GRIN2CQ14957 1233 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TTC39AQ5SRH9 613 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 GORABQ5T7V8 394 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 DTHD1Q6ZMT9 781 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TTLL7Q6ZT98 887 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 LRRC8AQ8IWT6 810 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 C17orf53Q8N3J3 647 aaPredicted RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 FSIP1Q8NA03 581 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 LINC00301Q8NCQ3 95 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 GLIS3Q8NEA6 775 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 NCOA7Q8NI08 942 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 CACTINQ8WUQ7 758 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 MRPS27Q92552 414 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 APPBP2Q92624 585 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 C8orf76Q96K31 380 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TIGD1Q96MW7 591 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 NSUN5Q96P11 429 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 FEZ1Q99689 392 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 ZKSCAN3Q9BRR0 538 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TINF2Q9BSI4 451 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 NOC4LQ9BVI4 516 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 LRRC2Q9BYS8 371 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 NXF1Q9UBU9 619 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 DDX41Q9UJV9 622 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 PCDHA7Q9UN72 937 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 AFDNP55196 1824 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 SPATA31A3Q5VYP0 1347 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 CARMIL3Q8ND23 1372 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 TNS3Q68CZ2 1445 aa6.91□□□□□ -1.3
CHMP4A-210ENST00000552620 M0R2C6 588 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 ZNF213O14771 459 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 MYO1BO43795 1136 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 NRDCO43847 1150 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CDKL5O76039 1030 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 FDPSP14324 419 aaKnown RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CMA1P23946 247 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CCT2P78371 535 aaKnown RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 GPLD1P80108 840 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CEBPZQ03701 1054 aaKnown RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 PWP1Q13610 501 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 STK38Q15208 465 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 TTF1Q15361 905 aaPredicted RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 ZRSR1Q15695 479 aaKnown RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 TPD52L1Q16890 204 aaPredicted RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 LRRC24Q50LG9 513 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 ZNF394Q53GI3 561 aa6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 CPLX2Q6PUV4 134 aaKnown RBP6.9□□□□□ -1.3
CHMP4A-210ENST00000552620 SYNE3Q6ZMZ3 975 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms