RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 ADGRB2O60241 1585 aa3.7□□□□□ -1.82
PTCH1-223ENST00000551623 NALCNQ8IZF0 1738 aa3.7□□□□□ -1.82
PTCH1-223ENST00000551623 TNS1Q9HBL0 1735 aaKnown RBP3.7□□□□□ -1.82
PTCH1-223ENST00000551623 IQGAP3Q86VI3 1631 aa3.7□□□□□ -1.82
PTCH1-223ENST00000551623 RREB1Q92766 1687 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 KANK1Q14678 1352 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 ENC1O14682 589 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 KCNC1P48547 511 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 CDR1P51861 262 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 ETF1P62495 437 aaKnown RBP3.69□□□□□ -1.82
PTCH1-223ENST00000551623 R3HDM1Q15032 1099 aaKnown RBP3.69□□□□□ -1.82
PTCH1-223ENST00000551623 LRRC14Q15048 493 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 VPS72Q15906 364 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 UBXN11Q5T124 520 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 NLRX1Q86UT6 975 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 MZB1Q8WU39 189 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 VWCEQ96DN2 955 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 CCDC97Q96F63 343 aaPredicted RBP3.69□□□□□ -1.82
PTCH1-223ENST00000551623 PLPPR2Q96GM1 343 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 CAMKK2Q96RR4 588 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 GPR62Q9BZJ7 368 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 SERPINA10Q9UK55 444 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 BRWD3Q6RI45 1802 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 RGPD1P0DJD0 1748 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 NWD2Q9ULI1 1742 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 USP32Q8NFA0 1604 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 MYOM3Q5VTT5 1437 aa3.69□□□□□ -1.82
PTCH1-223ENST00000551623 THSD7AQ9UPZ6 1657 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 CDC42BPGQ6DT37 1551 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 MAP3K5Q99683 1374 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 NOTOA8MTQ0 251 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 NDUFB5O43674 189 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 PAGE1O75459 146 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 ETV3P41162 512 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 PLCB3Q01970 1234 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 RASIP1Q5U651 963 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 HDXQ7Z353 690 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 KRT27Q7Z3Y8 459 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 C14orf37Q86TY3 774 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 DDX17Q92841 729 aaKnown RBP3.68□□□□□ -1.82
PTCH1-223ENST00000551623 PWWP2AQ96N64 755 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 BCO2Q9BYV7 579 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 NIF3L1Q9GZT8 377 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 SCAND2PQ9GZW5 306 aaPredicted RBP3.68□□□□□ -1.82
PTCH1-223ENST00000551623 CROCC2H7BZ55 1655 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 GCC2Q8IWJ2 1684 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 NPHP3Q7Z494 1330 aa3.68□□□□□ -1.82
PTCH1-223ENST00000551623 METP08581 1390 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 GPR182O15218 404 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 EFEMP2O95967 443 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 SERPINB4P48594 390 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 YBX1P67809 324 aaKnown RBP3.67□□□□□ -1.82
PTCH1-223ENST00000551623 OLFML2BQ68BL8 750 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 PI16Q6UXB8 463 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 TPTE2Q6XPS3 522 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 IGDCC3Q8IVU1 814 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 LINC01599Q8WXQ3 324 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 MRIQ9BWK5 157 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 SLITRK6Q9H5Y7 841 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 SPON1Q9HCB6 807 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 CRTAC1Q9NQ79 661 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 NLRP2Q9NX02 1062 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 SMPD4Q9NXE4 827 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 ABCC5O15440 1437 aa3.67□□□□□ -1.82
PTCH1-223ENST00000551623 C1QTNF3-AMACRE9PGA6 284 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 FFAR3O14843 346 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 KCNQ2O43526 872 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 SLURP1P55000 103 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 CAP1Q01518 475 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 TEKQ02763 1124 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 FERMT3Q86UX7 667 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 C3orf58Q8NDZ4 430 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 NUP188Q5SRE5 1749 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 SPATA31A3Q5VYP0 1347 aa3.66□□□□□ -1.82
PTCH1-223ENST00000551623 CAMTA1Q9Y6Y1 1673 aa3.65□□□□□ -1.82
PTCH1-223ENST00000551623 NRAPQ86VF7 1730 aa3.65□□□□□ -1.82
PTCH1-223ENST00000551623 HFM1A2PYH4 1435 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 RRBP1Q9P2E9 1410 aaKnown RBP3.65□□□□□ -1.83
PTCH1-223ENST00000551623 ABLIM1O14639 778 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 ICMTO60725 284 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 SLPIP03973 132 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 C6P13671 934 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 GRK4P32298 578 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 GDF5P43026 501 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 ARHGAP4P98171 946 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 PTPN11Q06124 597 aaPredicted RBP3.65□□□□□ -1.83
PTCH1-223ENST00000551623 CRB2Q5IJ48 1285 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 WIPI1Q5MNZ9 446 aaPredicted RBP3.65□□□□□ -1.83
PTCH1-223ENST00000551623 NXPE4Q6UWF7 544 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 LDHDQ86WU2 507 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 DTWD2Q8NBA8 298 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 DNAJB8Q8NHS0 232 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 CITED4Q96RK1 184 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 ORAI2Q96SN7 254 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 DPH2Q9BQC3 489 aaPredicted RBP3.65□□□□□ -1.83
PTCH1-223ENST00000551623 G6PC3Q9BUM1 346 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 CEP44Q9C0F1 390 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 USP40Q9NVE5 1235 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 EGFL7Q9UHF1 273 aa3.65□□□□□ -1.83
PTCH1-223ENST00000551623 KCNH3Q9ULD8 1083 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms