RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TECPR2O15040 1411 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 NAIPQ13075 1403 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 ATP10DQ9P241 1426 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 SSPNQ14714 243 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 SNX17Q15036 470 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 PRAMEF13Q5VWM6 474 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 NLGN2Q8NFZ4 835 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 RBCK1Q9BYM8 510 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 DUSP15Q9H1R2 295 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-206ENST00000550611 TRIT1Q9H3H1 467 aaKnown RBP5.33□□□□□ -1.56
LIMA1-206ENST00000550611 CLTCL1P53675 1640 aa5.33□□□□□ -1.56
LIMA1-206ENST00000550611 PARD3Q8TEW0 1356 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 PLEKHH1Q9ULM0 1364 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 OTOL1A6NHN0 477 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-206ENST00000550611 SERPINB4P48594 390 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 TIGD5Q53EQ6 642 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 RASIP1Q5U651 963 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 B4GALNT3Q6L9W6 998 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 TPTE2Q6XPS3 522 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 DHX38Q92620 1227 aaKnown RBP5.32□□□□□ -1.56
LIMA1-206ENST00000550611 PLPPR2Q96GM1 343 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 STK26Q9P289 416 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 SNCAIPQ9Y6H5 919 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 CDC42BPGQ6DT37 1551 aa5.32□□□□□ -1.56
LIMA1-206ENST00000550611 CCDC144AA2RUR9 1427 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 SBNO1A3KN83 1393 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 RREB1Q92766 1687 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 TPP2P29144 1249 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-206ENST00000550611 GSTT1P30711 240 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 ETF1P62495 437 aaKnown RBP5.31□□□□□ -1.56
LIMA1-206ENST00000550611 CHRNA2Q15822 529 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.31□□□□□ -1.56
LIMA1-206ENST00000550611 HOMEZQ8IX15 550 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 DACT3Q96B18 629 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-206ENST00000550611 SIGLEC10Q96LC7 697 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 SGPP1Q9BX95 441 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 CASZ1Q86V15 1759 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 PLCH1Q4KWH8 1693 aa5.31□□□□□ -1.56
LIMA1-206ENST00000550611 USP32Q8NFA0 1604 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 SPATA31A1Q5TZJ5 1347 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 WASH4PA8MWX3 477 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 HRKO00198 91 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 ETV3P41162 512 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 CHRNEQ04844 493 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 EGR3Q06889 387 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 SLC15A2Q16348 729 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 ZXDCQ2QGD7 858 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-206ENST00000550611 CDH24Q86UP0 819 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 SPPL2CQ8IUH8 684 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 GPR62Q9BZJ7 368 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 SRCIN1Q9C0H9 1055 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 MTFR1LQ9H019 292 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 C14orf93Q9H972 538 aaKnown RBP5.3□□□□□ -1.56
LIMA1-206ENST00000550611 DUSP13Q9UII6 198 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 TNS3Q68CZ2 1445 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 SPATA31E1Q6ZUB1 1445 aa5.3□□□□□ -1.56
LIMA1-206ENST00000550611 PLSCR1O15162 318 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 PI3P19957 117 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 PDE6BP35913 854 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 AFF3P51826 1226 aaKnown RBP5.29□□□□□ -1.56
LIMA1-206ENST00000550611 PTPN11Q06124 597 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-206ENST00000550611 EFEMP1Q12805 493 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 RGL3Q3MIN7 710 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 JMYQ8N9B5 988 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 SHISA4Q96DD7 197 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 Q96M66 194 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 TEPSINQ96N21 525 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 GPATCH2Q9NW75 528 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 IRAK3Q9Y616 596 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 TACC3Q9Y6A5 838 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 YTHDC2Q9H6S0 1430 aaKnown RBP5.29□□□□□ -1.56
LIMA1-206ENST00000550611 RRBP1Q9P2E9 1410 aaKnown RBP5.29□□□□□ -1.56
LIMA1-206ENST00000550611 ARHGEF10O15013 1369 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 ANKRD30BQ9BXX2 1392 aa5.29□□□□□ -1.56
LIMA1-206ENST00000550611 DLC1Q96QB1 1528 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 NRXN1Q9ULB1 1477 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 SLC22A31A6NKX4 558 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 SPATS1Q496A3 300 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 WIPI1Q5MNZ9 446 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-206ENST00000550611 PCNX4Q63HM2 1172 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 TSPYL5Q86VY4 417 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-206ENST00000550611 MRPL41Q8IXM3 137 aaKnown RBP5.28□□□□□ -1.56
LIMA1-206ENST00000550611 SP8Q8IXZ3 490 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 PMFBP1Q8TBY8 1022 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 PANK1Q8TE04 598 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 XAGE3Q8WTP9 111 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 GAL3ST3Q96A11 431 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 C1orf115Q9H7X2 142 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 STK32BQ9NY57 414 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 PIK3C2GO75747 1445 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 ADAMTS20P59510 1910 aa5.28□□□□□ -1.56
LIMA1-206ENST00000550611 CARNS1A5YM72 827 aa5.27□□□□□ -1.57
LIMA1-206ENST00000550611 GRK4P32298 578 aa5.27□□□□□ -1.57
LIMA1-206ENST00000550611 TXNRD1Q16881 649 aa5.27□□□□□ -1.57
LIMA1-206ENST00000550611 DNAJB8Q8NHS0 232 aa5.27□□□□□ -1.57
LIMA1-206ENST00000550611 FEZF2Q8TBJ5 459 aa5.27□□□□□ -1.57
LIMA1-206ENST00000550611 SYTL4Q96C24 671 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-206ENST00000550611 PRAM1Q96QH2 718 aa5.27□□□□□ -1.57
LIMA1-206ENST00000550611 MBD1Q9UIS9 605 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-206ENST00000550611 NWD2Q9ULI1 1742 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms