RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 KIFC2Q96AC6 838 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.28■□□□□ 0.04
SCAF11-208ENST00000546534 TRPV6Q9H1D0 765 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 BOLA2Q9H3K6 86 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 SLC38A10Q9HBR0 1119 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 FBXO40Q9UH90 709 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 PCDHA11Q9Y5I1 949 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 SLC4A7Q9Y6M7 1214 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 CABYRO75952 493 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 PTGS1P23219 599 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 ITGA7Q13683 1181 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 SKIV2LQ15477 1246 aaKnown RBP15.27■□□□□ 0.04
SCAF11-208ENST00000546534 AAK1Q2M2I8 961 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 STK11IPQ8N1F8 1099 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 CHST13Q8NET6 341 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 VWCEQ96DN2 955 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 KIF1BPQ96EK5 621 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 WNT8AQ9H1J5 351 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 CLIP2Q9UDT6 1046 aa15.27■□□□□ 0.04
SCAF11-208ENST00000546534 RFXAPO00287 272 aa15.26■□□□□ 0.03
SCAF11-208ENST00000546534 ERC2O15083 957 aa15.26■□□□□ 0.03
SCAF11-208ENST00000546534 UBE3CQ15386 1083 aa15.26■□□□□ 0.03
SCAF11-208ENST00000546534 TLK2Q86UE8 772 aa15.26■□□□□ 0.03
SCAF11-208ENST00000546534 RPUSD2Q8IZ73 545 aaKnown RBP15.26■□□□□ 0.03
SCAF11-208ENST00000546534 PUS7LQ9H0K6 701 aaKnown RBP15.26■□□□□ 0.03
SCAF11-208ENST00000546534 HOMER2Q9NSB8 354 aa15.26■□□□□ 0.03
SCAF11-208ENST00000546534 ARPP21Q9UBL0 812 aaPredicted RBP15.26■□□□□ 0.03
SCAF11-208ENST00000546534 GNEQ9Y223 722 aaKnown RBP15.26■□□□□ 0.03
SCAF11-208ENST00000546534 GBF1Q92538 1859 aa15.26■□□□□ 0.03
SCAF11-208ENST00000546534 TCF20Q9UGU0 1960 aaKnown RBP15.25■□□□□ 0.03
SCAF11-208ENST00000546534 ZBBXA8MT70 800 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 B4GALT4O60513 344 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 ATP2A2P16615 1042 aaKnown RBP15.25■□□□□ 0.03
SCAF11-208ENST00000546534 ATP5JP18859 108 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 PSMC6P62333 389 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 FSCN1Q16658 493 aaKnown RBP15.25■□□□□ 0.03
SCAF11-208ENST00000546534 FAM133AQ8N9E0 248 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 SCLYQ96I15 445 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 HAUS7Q99871 368 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 LRFN3Q9BTN0 628 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 AP5M1Q9H0R1 490 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 EPHX3Q9H6B9 360 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 MKNK2Q9HBH9 465 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 FEM1BQ9UK73 627 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 MTCH2Q9Y6C9 303 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 STK24Q9Y6E0 443 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 MCM3APO60318 1980 aa15.25■□□□□ 0.03
SCAF11-208ENST00000546534 GREB1LQ9C091 1923 aaPredicted RBP15.25■□□□□ 0.03
SCAF11-208ENST00000546534 IGKV6D-41A0A0C4DH26 115 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 SOWAHBA6NEL2 793 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 DYNC1LI2O43237 492 aaPredicted RBP15.24■□□□□ 0.03
SCAF11-208ENST00000546534 SMPD1P17405 629 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 OAZ1P54368 228 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 SBK1Q52WX2 424 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 AGBL1Q96MI9 1066 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 SEZ6LQ9BYH1 1024 aa15.24■□□□□ 0.03
SCAF11-208ENST00000546534 DDX49Q9Y6V7 483 aaKnown RBP15.24■□□□□ 0.03
SCAF11-208ENST00000546534 ASB14A6NK59 587 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 GALR2O43603 387 aaPredicted RBP15.23■□□□□ 0.03
SCAF11-208ENST00000546534 POU3F3P20264 500 aaPredicted RBP15.23■□□□□ 0.03
SCAF11-208ENST00000546534 TTLL4Q14679 1199 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 TMEM67Q5HYA8 995 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 TMEM63BQ5T3F8 832 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 PANK1Q8TE04 598 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 MKL1Q969V6 931 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 STRBPQ96SI9 672 aaKnown RBP15.23■□□□□ 0.03
SCAF11-208ENST00000546534 ACAD9Q9H845 621 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 CERS4Q9HA82 394 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 A1CFQ9NQ94 594 aaKnown RBP15.23■□□□□ 0.03
SCAF11-208ENST00000546534 PDGFCQ9NRA1 345 aa15.23■□□□□ 0.03
SCAF11-208ENST00000546534 ARIH1Q9Y4X5 557 aaPredicted RBP15.23■□□□□ 0.03
SCAF11-208ENST00000546534 CHD7Q9P2D1 2997 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 EPOPA6NHQ4 379 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 GSG1L2A8MUP6 293 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 MINDY4BA8MYZ0 360 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 GTPBP6O43824 516 aaPredicted RBP15.22■□□□□ 0.03
SCAF11-208ENST00000546534 ZEB2O60315 1214 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 CA3P07451 260 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 KRT40Q6A162 431 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 LRRC47Q8N1G4 583 aaKnown RBP15.22■□□□□ 0.03
SCAF11-208ENST00000546534 CEP95Q96GE4 821 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 ALDH8A1Q9H2A2 487 aaPredicted RBP15.22■□□□□ 0.03
SCAF11-208ENST00000546534 COG6Q9Y2V7 657 aa15.22■□□□□ 0.03
SCAF11-208ENST00000546534 TLL1O43897 1013 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 PRDM1O75626 825 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 CYP2C9P11712 490 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 BMP3P12645 472 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 IQSEC1Q6DN90 963 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 ZSCAN25Q6NSZ9 544 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 TAPT1Q6NXT6 567 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 EEPD1Q7L9B9 569 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 DEFB128Q7Z7B8 93 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 SIRT2Q8IXJ6 389 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 GMCL1P1Q8NEA9 526 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 RNF146Q9NTX7 359 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 MTMR4Q9NYA4 1195 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 COG5Q9UP83 839 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 HCN4Q9Y3Q4 1203 aa15.21■□□□□ 0.03
SCAF11-208ENST00000546534 ZNF536O15090 1300 aa15.2■□□□□ 0.02
SCAF11-208ENST00000546534 PRRC2BQ5JSZ5 2229 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms